Evidence map›Paper›PMID 28914604›Full record

ArticleeLife2017

Scc2/Nipbl hops between chromosomal cohesin rings after loading.

James Rhodes, Davide Mazza, Kim Nasmyth, Stephan Uphoff

Open access · goldAbstract read
In one paragraph

Article in eLife, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 65 papers.

0numbers the graph read from it
0cells of the map it votes in
65citing papers in PubMed
6.6field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

65 citing papers in PubMed, 116 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. NIPBL and STAG1 enable loop extrusion by providing differential DNA-cohesin affinity.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. Cohesin regulation and roles in chromosome structure and function.Current opinion in genetics & development · 2024
    Review
  15. Article
  16. Article
  17. Review
  18. Review
  19. Article
  20. Transcription shapes 3D chromatin organization by interacting with loop extrusion.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article

5 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

James RhodesDepartment of Biochemistry, Oxford University, Oxford, United Kingdom.ORCID http://orcid.org/0000-0001-5853-7343
Davide MazzaIstituto Scientifico Ospedale San Raffaele, Centro di Imaging Sperimentale, Milano, Italy.ORCID http://orcid.org/0000-0003-2776-4142
Kim NasmythDepartment of Biochemistry, Oxford University, Oxford, United Kingdom.ORCID https://orcid.org/0000-0001-7030-4403
Stephan UphoffDepartment of Biochemistry, Oxford University, Oxford, United Kingdom.ORCID http://orcid.org/0000-0002-3579-0888
University of Oxford · GBIRCCS Ospedale San Raffaele · IT

Funding

Cancer Research UK C573/A12386Wellcome Trust 091859/Z/10/ZWellcome Trust 101636/Z/13/ZWellcome Trust 206159/Z/17/Z
6 · The paper itself

Abstract

The cohesin complex mediates DNA-DNA interactions both between (sister chromatid cohesion) and within chromosomes (DNA looping). It has been suggested that intra-chromosome loops are generated by extrusion of DNAs through the lumen of cohesin's ring. Scc2 (Nipbl) stimulates cohesin's ABC-like ATPase and is essential for loading cohesin onto chromosomes. However, it is possible that the stimulation of cohesin's ATPase by Scc2 also has a post-loading function, for example driving loop extrusion. Using fluorescence recovery after photobleaching (FRAP) and single-molecule tracking in human cells, we show that Scc2 binds dynamically to chromatin, principally through an association with cohesin. Scc2's movement within chromatin is consistent with a 'stop-and-go' or 'hopping' motion. We suggest that a low diffusion coefficient, a low stoichiometry relative to cohesin, and a high affinity for chromosomal cohesin enables Scc2 to move rapidly from one chromosomal cohesin complex to another, performing a function distinct from loading.

Indexed as

Cell Cycle ProteinsCell LineChromatinChromosomal Proteins, Non-HistoneCohesinsHumansMicroscopy, ConfocalOptical ImagingProteinsSingle Molecule ImagingCell Cycle ProteinsChromatinChromosomal Proteins, Non-HistoneCohesinsNIPBL protein, humanProteinschromosomesCohesingenesHoppinghumanLoop ExtrusionNipblScc2TADs

Identifiers

PMID28914604
PMCPMC5621834
OpenAlexW2951976277

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.