Evidence map›Paper›PMID 28913944›Full record

ArticleGenetic epidemiology2017

The more you test, the more you find: The smallest P-values become increasingly enriched with real findings as more tests are conducted.

Olga A Vsevolozhskaya, Chia-Ling Kuo, Gabriel Ruiz, Luda Diatchenko, Dmitri V Zaykin

Abstract read
In one paragraph

Article in Genetic epidemiology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Olga A VsevolozhskayaDepartment of Biostatistics, University of Kentucky, Lexington, Kentucky, United States of America.ORCID 0000-0001-9376-3645
Chia-Ling KuoDepartment of Community Medicine and Heath Care, Institute for Systems Genomics, University of Connecticut Health Center, Farmington, Connecticut, United States of America.
Gabriel RuizSummer Internship Program, National Institute of Environmental Health Sciences, National Institutes of Health, Durham, North Carolina, USA.
Luda DiatchenkoThe Alan Edwards Centre for Research on Pain, McGill University, Montreal, Canada.
Dmitri V ZaykinNational Institute of Environmental Health Sciences, National Institutes of Health, Durham, North Carolina, USA.

Funding

Statistical, population genetics and genetic epidemiologyZIAES101866 · NIEHS · NATIONAL INSTITUTE OF ENVIRONMENTAL HEALTH SCIENCES · PI ZAYKIN, DMITRI V · 2009 to 2021
$5.8M
Statistical, population genetics and genetic epidemiologyZ01ES101866 · NIEHS · NATIONAL INSTITUTE OF ENVIRONMENTAL HEALTH SCIENCES · PI ZAYKIN, DMITRI V · 2005 to 2008
$911k
Intramural NIH HHS Z01 ES101866
6 · The paper itself

Abstract

The increasing accessibility of data to researchers makes it possible to conduct massive amounts of statistical testing. Rather than follow specific scientific hypotheses with statistical analysis, researchers can now test many possible relationships and let statistics generate hypotheses for them. The field of genetic epidemiology is an illustrative case, where testing of candidate genetic variants for association with an outcome has been replaced by agnostic screening of the entire genome. Poor replication rates of candidate gene studies have improved dramatically with the increase in genomic coverage, due to factors such as adoption of better statistical practices and availability of larger sample sizes. Here, we suggest that another important factor behind the improved replicability of genome-wide scans is an increase in the amount of statistical testing itself. We show that an increase in the number of tested hypotheses increases the proportion of true associations among the variants with the smallest P-values. We develop statistical theory to quantify how the expected proportion of genuine signals (EPGS) among top hits depends on the number of tests. This enrichment of top hits by real findings holds regardless of whether genome-wide statistical significance has been reached in a study. Moreover, if we consider only those "failed" studies that produce no statistically significant results, the same enrichment phenomenon takes place: the proportion of true associations among top hits grows with the number of tests. The enrichment occurs even if the true signals are encountered at the logarithmically decreasing rate with the additional testing.

Indexed as

Models, GeneticBayes TheoremGenome-Wide Association StudyHumansModels, StatisticalBayesian analysisgenome-wide association studiesgenuine signalmultiple testingprobability of a true findingsequencing studiestrue associationvariability of P-values

Identifiers

PMID28913944
PMCPMC7080647

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.