ArticlePlant biotechnology journal2018
Conversion of array-based single nucleotide polymorphic markers for use in targeted genotyping by sequencing in hexaploid wheat (Triticum aestivum).
Article in Plant biotechnology journal, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
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Who cites it
26 citing papers in PubMed.
- Genetic dissection of cold stress tolerance and yield potential under cold stress in nested synthetic wheat (Triticum aestivum L.) introgression libraries using multi-locus genome-wide association and haplotype analysis.Functional & integrative genomics · 2026Article
- The Bra1K array: an efficient and versatile 1K liquid-phase SNP chip for genetics and breeding in Chinese cabbage.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2026Article
- Genome-wide association mapping, phylogenetic study, and multivariate analysis of component traits of grain yield in wheat under heat stress conditions.Plant molecular biology · 2026Article
- Development of liquid chip for functional genes in foxtail millet (Frontiers in plant science · 2026Article
- Genome-wide association study of agronomic traits in winter wheat (Triticum aestivum L.) using a custom SNP marker set.BMC plant biology · 2025Article
- TEA5K: a high-resolution and liquid-phase multiple-SNP array for molecular breeding in tea plant.Journal of nanobiotechnology · 2025Article
- Identification of novel marker-trait associations for agronomic traits in bread wheat under WANA environments through GWAS.PloS one · 2025Article
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- A wheat chromosome segment substitution line series supports characterization and use of progenitor genetic variation.The plant genome · 2024Article
- Skim exome capture genotyping in wheat.The plant genome · 2023Article
- Development of breeder chip for gene detection and molecular-assisted selection by target sequencing in wheat.Molecular breeding : new strategies in plant improvement · 2023Article
- New insights into the novel sequences of the chicken pan-genome by liquid chip.Journal of animal science · 2022Article
- High-throughput SNP markers for authentication of Korean wheat cultivars based on seven complete plastomes and the nuclear genome.Food science and biotechnology · 2022Article
- Development of the maize 5.5K loci panel for genomic prediction through genotyping by target sequencing.Frontiers in plant science · 2022Article
- Development of high-resolution multiple-SNP arrays for genetic analyses and molecular breeding through genotyping by target sequencing and liquid chip.Plant communications · 2021Article
- Population structure and genome-wide association studies in bread wheat for phosphorus efficiency traits using 35 K Wheat Breeder's Affymetrix array.Scientific reports · 2021Article
- Generation of Doubled Haploid Wheat-Frontiers in plant science · 2021Article
- Multi-parent populations in crops: a toolbox integrating genomics and genetic mapping with breeding.Heredity · 2020Review
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Corrections and comments
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Authors and funding
8 authors.
Funding
Abstract
Wheat breeders and academics alike use single nucleotide polymorphisms (SNPs) as molecular markers to characterize regions of interest within the hexaploid wheat genome. A number of SNP-based genotyping platforms are available, and their utility depends upon factors such as the available technologies, number of data points required, budgets and the technical expertise required. Unfortunately, markers can rarely be exchanged between existing and newly developed platforms, meaning that previously generated data cannot be compared, or combined, with more recently generated data sets. We predict that genotyping by sequencing will become the predominant genotyping technology within the next 5-10 years. With this in mind, to ensure that data generated from current genotyping platforms continues to be of use, we have designed and utilized SNP-based capture probes from several thousand existing and publicly available probes from Axiom® and KASP™ genotyping platforms. We have validated our capture probes in a targeted genotyping by sequencing protocol using 31 previously genotyped UK elite hexaploid wheat accessions. Data comparisons between targeted genotyping by sequencing, Axiom® array genotyping and KASP™ genotyping assays, identified a set of 3256 probes which reliably bring together targeted genotyping by sequencing data with the previously available marker data set. As such, these probes are likely to be of considerable value to the wheat community. The probe details, full probe sequences and a custom built analysis pipeline may be freely downloaded from the CerealsDB website (http://www.cerealsdb.uk.net/cerealgenomics/CerealsDB/sequence_capture.php).
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.