ArticleScientific reports2017
Development of chloroplast genome resources for peanut (Arachis hypogaea L.) and other species of Arachis.
Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 27 papers.
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27 citing papers in PubMed.
- Mutation Pressure and Gene-Specific Selection Shape Codon Usage Bias in the Chloroplast Genomes ofEcology and evolution · 2026Article
- Comparative plastid genomics of Hippophae reveals phylogenetic relationships and provides candidate DNA markers for taxonomic identification.Scientific reports · 2026Article
- The Complete Chloroplast Genomic Characteristics and Phylogenetic Analysis ofInternational journal of molecular sciences · 2026Article
- Characteristic analysis of the chloroplast genome ofFrontiers in plant science · 2026Article
- The complete chloroplast genome sequence ofMitochondrial DNA. Part B, Resources · 2026Article
- A slow march along the South American Dry Diagonal: a multi-gene molecular phylogeny and biogeographical history of the peanut genus, Arachis L.Annals of botany · 2025Article
- Phylogeny and evolutionary dynamics of the Rubia genus based on the chloroplast genome of Rubia tibetica.Scientific reports · 2025Article
- Article
- Sequence characteristics, genetic diversity and phylogenetic analysis of the Cucurbita ficifolia (Cucurbitaceae) chloroplasts genome.BMC genomics · 2024Article
- The complete chloroplast genome ofMitochondrial DNA. Part B, Resources · 2024Article
- Complete Chloroplast Genome ofGenes · 2023Article
- Molecular characterizations of genes in chloroplast genomes of the genus Arachis L. (Fabaceae) based on the codon usage divergence.PloS one · 2023Article
- First comparative analysis of complete chloroplast genomes among sixFrontiers in plant science · 2023Article
- Plastid Phylogenomic Analyses Reveal the Taxonomic Position ofPlants (Basel, Switzerland) · 2022Article
- The Complete Chloroplast Genome Sequence ofCurrent genomics · 2022Article
- The complete chloroplast genome of Onobrychis gaubae (Fabaceae-Papilionoideae): comparative analysis with related IR-lacking clade species.BMC plant biology · 2022Article
- Complete chloroplast genome ofPhysiology and molecular biology of plants : an international journal of functional plant biology · 2021Article
- Green giant-a tiny chloroplast genome with mighty power to produce high-value proteins: history and phylogeny.Plant biotechnology journal · 2021Review
- Comparative and Phylogenetic Analysis of Complete Chloroplast Genomes in Eragrostideae (Chloridoideae, Poaceae).Plants (Basel, Switzerland) · 2021Article
- Chloroplast Phylogenomic Analyses Reveal a Maternal Hybridization Event Leading to the Formation of Cultivated Peanuts.Frontiers in plant science · 2021Article
Corrections and comments
- Erratum issued
Authors and funding
6 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
absractPeanut (Arachis hypogaea L.) is an important oilseed and cash crop worldwide. Wild Arachis spp. are potental sources of novel genes for the genetic improvement of cultivated peanut. Understanding the genetic relationships with cultivated peanut is important for the efficient use of wild species in breeding programmes. However, for this genus, only a few genetic resources have been explored so far. In this study, new chloroplast genomic resources have been developed for the genus Arachis based on whole chloroplast genomes from seven species that were sequenced using next-generation sequencing technologies. The chloroplast genomes ranged in length from 156,275 to 156,395 bp, and their gene contents, gene orders, and GC contents were similar to those for other Fabaceae species. Comparative analyses among the seven chloroplast genomes revealed 643 variable sites that included 212 singletons and 431 parsimony-informative sites. We also identified 101 SSR loci and 85 indel mutation events. Thirty-seven SSR loci were found to be polymorphic by in silico comparative analyses. Eleven highly divergent DNA regions, suitable for phylogenetic and species identification, were detected in the seven chloroplast genomes. A molecular phylogeny based on the complete chloroplast genome sequences provided the best resolution of the seven Arachis species.
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