Evidence map›Paper›PMID 28912501›Full record

ArticleScientific reports2017

Transcription regulation of CDKN1A (p21/CIP1/WAF1) by TRF2 is epigenetically controlled through the REST repressor complex.

Tabish Hussain, Dhurjhoti Saha, Gunjan Purohit, Anirban Kar, Anand Kishore Mukherjee, Shalu Sharma, Suman Sengupta, Parashar Dhapola, Basudeb Maji, Sreekanth Vedagopuram and 8 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed
2.7field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed, 67 citations in OpenAlex.

  1. Article
  2. Review
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  10. Review
  11. BEND3 safeguards pluripotency by repressing differentiation-associated genes.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  12. G-quadruplex DNA: a novel target for drug design.Cellular and molecular life sciences : CMLS · 2021
    Review
  13. Review
  14. The Intra- and Extra-Telomeric Role of TRF2 in the DNA Damage Response.International journal of molecular sciences · 2021
    Review
  15. Review
  16. Article
  17. Article
  18. The regulation and functions of DNA and RNA G-quadruplexes.Nature reviews. Molecular cell biology · 2020
    Review
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 5 institutions in 3 countries.

Tabish HussainGenomics and Molecular Medicine Unit, CSIR-Institute of Genomics and Integrative Biology, Mathura Road, New Delhi, 110025, India.
Dhurjhoti SahaGenomics and Molecular Medicine Unit, CSIR-Institute of Genomics and Integrative Biology, Mathura Road, New Delhi, 110025, India.
Gunjan PurohitGenomics and Molecular Medicine Unit, CSIR-Institute of Genomics and Integrative Biology, Mathura Road, New Delhi, 110025, India.
Anirban KarGenomics and Molecular Medicine Unit, CSIR-Institute of Genomics and Integrative Biology, Mathura Road, New Delhi, 110025, India.
Anand Kishore MukherjeeGenomics and Molecular Medicine Unit, CSIR-Institute of Genomics and Integrative Biology, Mathura Road, New Delhi, 110025, India.
Shalu SharmaGenomics and Molecular Medicine Unit, CSIR-Institute of Genomics and Integrative Biology, Mathura Road, New Delhi, 110025, India.
Suman SenguptaGenomics and Molecular Medicine Unit, CSIR-Institute of Genomics and Integrative Biology, Mathura Road, New Delhi, 110025, India.
Parashar DhapolaG.N.R. Knowledge Centre for Genome Informatics, CSIR- Institute of Genomics and Integrative Biology, Mathura Road, New Delhi, 110025, India.
Basudeb MajiDepartment of Organic Chemistry, Indian Institute of Science, Bangalore, India.
Sreekanth VedagopuramLaboratory of Nanotechnology and Chemical Biology, Regional Centre for Biotechnology, NCR Biotech Cluster, Faridabad, Haryana, 121001, India.
Nobuko T HorikoshiDepartment of Radiation Oncology, The Houston Methodist Research Institute, Houston, TX, 77030, USA.
Nobuo HorikoshiDepartment of Radiation Oncology, The Houston Methodist Research Institute, Houston, TX, 77030, USA.
Raj K PanditaDepartment of Radiation Oncology, The Houston Methodist Research Institute, Houston, TX, 77030, USA.
Santanu BhattacharyaDepartment of Organic Chemistry, Indian Institute of Science, Bangalore, India.
Avinash BajajLaboratory of Nanotechnology and Chemical Biology, Regional Centre for Biotechnology, NCR Biotech Cluster, Faridabad, Haryana, 121001, India.ORCID 0000-0002-1333-9316
Jean-François RiouStructure des Acides Nucléiques, Télomères et Evolution, Muséum National d'Histoire Naturelle, 43 rue Cuvier, 75231, Paris cedex 05, France.ORCID 0000-0002-0055-6506
Tej K PanditaDepartment of Radiation Oncology, The Houston Methodist Research Institute, Houston, TX, 77030, USA.ORCID 0000-0002-1399-808X
Shantanu ChowdhuryGenomics and Molecular Medicine Unit, CSIR-Institute of Genomics and Integrative Biology, Mathura Road, New Delhi, 110025, India. shantanuc@igib.res.in.
Institute of Genomics and Integrative Biology · INHouston Methodist · USJawaharlal Nehru Centre for Advanced Scientific Research · INRegional Centre for Biotechnology · INInstitut de Systématique, Évolution, Biodiversité · FR

Funding

CHROMATIN MODIFYING FACTORS CONTROL RADIATION RESPONSE AND GENOMIC STABILITYR01CA129537 · NCI · WASHINGTON UNIVERSITY · PI PANDITA, TEJ K · 2008 to 2018
$3.3M
Role of Heterochromatin protein 1 Beta in Genome Maintenance and OncogenesisR01GM109768 · NIGMS · METHODIST HOSPITAL RESEARCH INSTITUTE · PI PANDITA, TEJ K · 2014 to 2017
$1.2M
DBT-Wellcome Trust India Alliance 500127-Z-09-ZNCI NIH HHS R01 CA129537NIGMS NIH HHS R01 GM109768Wellcome Trust
6 · The paper itself

Abstract

We observed extra-telomeric binding of the telomere repeat binding factor TRF2 within the promoter of the cyclin-dependent kinase CDKNIA (p21/CIP1/WAF1). This result in TRF2 induced transcription repression of p21. Interestingly, p21 repression was through engagement of the REST-coREST-LSD1-repressor complex and altered histone marks at the p21 promoter in a TRF2-dependent fashion. Furthermore, mutational analysis shows p21 repression requires interaction of TRF2 with a p21 promoter G-quadruplex. Physiologically, TRF2-mediated p21 repression attenuated drug-induced activation of cellular DNA damage response by evading G2/M arrest in cancer cells. Together these reveal for the first time role of TRF2 in REST- repressor complex mediated transcription repression.

Indexed as

Epigenetic RepressionGene Expression RegulationCell LineCo-Repressor ProteinsCyclin-Dependent Kinase Inhibitor p21HumansNerve Tissue ProteinsTelomeric Repeat Binding Protein 2Transcription, GeneticCo-Repressor ProteinsCyclin-Dependent Kinase Inhibitor p21Nerve Tissue ProteinsRCOR1 protein, humanTelomeric Repeat Binding Protein 2

Identifiers

PMID28912501
PMCPMC5599563
OpenAlexW2755331108

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.