Evidence map›Paper›PMID 28912448›Full record

ArticleNature communications2017

A general reaction mechanism for carbapenem hydrolysis by mononuclear and binuclear metallo-β-lactamases.

María-Natalia Lisa, Antonela R Palacios, Mahesh Aitha, Mariano M González, Diego M Moreno, Michael W Crowder, Robert A Bonomo, James Spencer, David L Tierney, Leticia I Llarrull and 1 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 63 papers.

0numbers the graph read from it
0cells of the map it votes in
63citing papers in PubMed
4.2field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

63 citing papers in PubMed, 121 citations in OpenAlex.

  1. Review
  2. Functional dynamics of water in New Delhi metallo-β-lactamase catalysis.Protein science : a publication of the Protein Society · 2026
    Article
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  7. OXA β-lactamases frombioRxiv : the preprint server for biology · 2024
    Article
  8. Review
  9. Review
  10. Article
  11. Article
  12. Structural role of K224 in taniborbactam inhibition of NDM-1.Antimicrobial agents and chemotherapy · 2024
    Article
  13. Review
  14. Article
  15. Fifty years of biophysics in Argentina.Biophysical reviews · 2023
    Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Review

3 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 5 countries.

María-Natalia LisaInstituto de Biología Molecular y Celular de Rosario (IBR, CONICET-UNR), Ocampo y Esmeralda, S2002LRK, Rosario, Argentina.ORCID http://orcid.org/0000-0001-9630-8090
Antonela R PalaciosInstituto de Biología Molecular y Celular de Rosario (IBR, CONICET-UNR), Ocampo y Esmeralda, S2002LRK, Rosario, Argentina.
Mahesh AithaDepartment of Chemistry and Biochemistry, Miami University, 651 E. High St., Oxford, OH, 45056, USA.
Mariano M GonzálezInstituto de Biología Molecular y Celular de Rosario (IBR, CONICET-UNR), Ocampo y Esmeralda, S2002LRK, Rosario, Argentina.
Diego M MorenoInstituto de Química Rosario (IQUIR, CONICET-UNR), Suipacha 531, Rosario, S2002LRK, Argentina.
Michael W CrowderDepartment of Chemistry and Biochemistry, Miami University, 651 E. High St., Oxford, OH, 45056, USA.
Robert A BonomoLouis Stokes Cleveland Department of Veterans Affairs Medical Center, Cleveland, OH 44106, USA.
James SpencerSchool of Cellular and Molecular Medicine, University of Bristol Biomedical Sciences Building, University Walk, Bristol, BS8 1TD, UK.
David L TierneyDepartment of Chemistry and Biochemistry, Miami University, 651 E. High St., Oxford, OH, 45056, USA.
Leticia I LlarrullInstituto de Biología Molecular y Celular de Rosario (IBR, CONICET-UNR), Ocampo y Esmeralda, S2002LRK, Rosario, Argentina. llarrull@ibr-conicet.gov.ar.
Alejandro J VilaInstituto de Biología Molecular y Celular de Rosario (IBR, CONICET-UNR), Ocampo y Esmeralda, S2002LRK, Rosario, Argentina. vila@ibr-conicet.gov.ar.
Consejo Nacional de Investigaciones Científicas y Técnicas · ARMiami University · USNational University of Rosario · ARLouis Stokes Cleveland VA Medical Center · USUniversity of Bristol · GB

Funding

Case Center for Synchrotron BiosciencesP30EB009998 · NIBIB · CASE WESTERN RESERVE UNIVERSITY · PI CHANCE, MARK R · 2009 to 2018
$8.4M
A Mechanism-Based Approach to Metallo-beta-Lactamase InhibitionR01AI100560 · NIAID · CASE WESTERN RESERVE UNIVERSITY · PI BONOMO, ROBERT A., SPENCER, JAMES · 2012 to 2022
$4.4M
Time-dependent structural studies on dinuclear metal ion containing enzymesR15GM093987 · NIGMS · MIAMI UNIVERSITY OXFORD · PI CROWDER, MICHAEL W, TIERNEY, DAVID L · 2010 to 2010
$426k
NIAID NIH HHS R01 AI100560NIBIB NIH HHS P30 EB009998NIGMS NIH HHS R15 GM093987
6 · The paper itself

Abstract

Carbapenem-resistant Enterobacteriaceae threaten human health, since carbapenems are last resort drugs for infections by such organisms. Metallo-β-lactamases (MβLs) are the main mechanism of resistance against carbapenems. Clinically approved inhibitors of MBLs are currently unavailable as design has been limited by the incomplete knowledge of their mechanism. Here, we report a biochemical and biophysical study of carbapenem hydrolysis by the B1 enzymes NDM-1 and BcII in the bi-Zn(II) form, the mono-Zn(II) B2 Sfh-I and the mono-Zn(II) B3 GOB-18. These MβLs hydrolyse carbapenems via a similar mechanism, with accumulation of the same anionic intermediates. We characterize the Michaelis complex formed by mono-Zn(II) enzymes, and we identify all intermediate species, enabling us to propose a chemical mechanism for mono and binuclear MβLs. This common mechanism open avenues for rationally designed inhibitors of all MβLs, notwithstanding the profound differences between these enzymes' active site structure, β-lactam specificity and metal content.Carbapenem-resistant bacteria pose a major health threat by expressing metallo-β-lactamases (MβLs), enzymes able to hydrolyse these life-saving drugs. Here the authors use biophysical and computational methods and show that different MβLs share the same reaction mechanism, suggesting new strategies for drug design.

Indexed as

beta-LactamasesCarbapenemsHydrolysisImipenemMagnetic Resonance SpectroscopyModels, MolecularMolecular Dynamics SimulationX-Ray Absorption SpectroscopyZincbeta-lactamase NDM-1beta-LactamasesCarbapenemsImipenemZinc

Identifiers

PMID28912448
PMCPMC5599593
OpenAlexW2755049281

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.