Evidence map›Paper›PMID 28910978›Full record

ArticleActa biochimica et biophysica Sinica2017

DNA-binding properties of FOXP3 transcription factor.

Jun Li, Longying Jiang, Xujun Liang, Lingzhi Qu, Daichao Wu, Xiaojuan Chen, Ming Guo, Zhuchu Chen, Lin Chen, Yongheng Chen

Open access · bronzeAbstract read
In one paragraph

Article in Acta biochimica et biophysica Sinica, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.4field-weighted citation impact, top 38% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 17 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Article
  5. T helper cell polarity determines salt sensitivity and hypertension development.Hypertension research : official journal of the Japanese Society of Hypertension · 2023
    Article
  6. Review
  7. Review
  8. Article
  9. Review
  10. Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 2 countries.

Jun LiKey Laboratory of Cancer Proteomics of Chinese Ministry of Health & Laboratory of Structural Biology, Xiangya Hospital, Central South University, Changsha 410008, China.
Longying JiangKey Laboratory of Cancer Proteomics of Chinese Ministry of Health & Laboratory of Structural Biology, Xiangya Hospital, Central South University, Changsha 410008, China.
Xujun LiangKey Laboratory of Cancer Proteomics of Chinese Ministry of Health & Laboratory of Structural Biology, Xiangya Hospital, Central South University, Changsha 410008, China.
Lingzhi QuKey Laboratory of Cancer Proteomics of Chinese Ministry of Health & Laboratory of Structural Biology, Xiangya Hospital, Central South University, Changsha 410008, China.
Daichao WuKey Laboratory of Cancer Proteomics of Chinese Ministry of Health & Laboratory of Structural Biology, Xiangya Hospital, Central South University, Changsha 410008, China.
Xiaojuan ChenKey Laboratory of Cancer Proteomics of Chinese Ministry of Health & Laboratory of Structural Biology, Xiangya Hospital, Central South University, Changsha 410008, China.
Ming GuoKey Laboratory of Cancer Proteomics of Chinese Ministry of Health & Laboratory of Structural Biology, Xiangya Hospital, Central South University, Changsha 410008, China.
Zhuchu ChenKey Laboratory of Cancer Proteomics of Chinese Ministry of Health & Laboratory of Structural Biology, Xiangya Hospital, Central South University, Changsha 410008, China.
Lin ChenKey Laboratory of Cancer Proteomics of Chinese Ministry of Health & Laboratory of Structural Biology, Xiangya Hospital, Central South University, Changsha 410008, China.
Yongheng ChenKey Laboratory of Cancer Proteomics of Chinese Ministry of Health & Laboratory of Structural Biology, Xiangya Hospital, Central South University, Changsha 410008, China.
Central South University · CNXiangya Hospital Central South University · CNSun Yat-sen University · CNSun Yat-sen University Cancer Center · CN

Funding

Explore FOXP3's role in the 3D organization of the genomeR01AI113009 · NIAID · UNIVERSITY OF SOUTHERN CALIFORNIA · PI CHEN, LIN · 2015 to 2019
$1.9M
NIAID NIH HHS R01 AI113009
6 · The paper itself

Abstract

FOXP3, a lineage-specific forkhead (FKH) transcription factor, plays essential roles in the development and function of regulatory T cells. However, the DNA-binding properties of FOXP3 are not well understood. In this study, FOXP3 fragments containing different domains were purified, and their DNA-binding properties were investigated using electrophoretic mobility shift assay and isothermal titration calorimetry (ITC). Both the FKH and leucine-zipper domains were required for optimal DNA binding for FOXP3. FOXP3 protein not only binds with DNA sequences containing one FKH consensus sequence, but also binds with DNA sequences with two direct repeats of consensus sequences separated by three-nucleotides (DRE3). Our results shed lights on the mechanisms by which FOXP3 recognizes cognate DNA elements, and would facilitate further structural and functional studies of FOXP3.

Indexed as

Nucleic Acid ConformationProtein DomainsAmino Acid SequenceBase SequenceBinding SitesDNAElectrophoretic Mobility Shift AssayForkhead Transcription FactorsHumansModels, MolecularProtein BindingDNAForkhead Transcription FactorsFOXP3 protein, humanDNA bindingelectrophoretic mobility shift assayFOXP3isothermal titration calorimetryprotein purification

Identifiers

PMID28910978
PMCPMC6276865
OpenAlexW2735774585

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.