Evidence map›Paper›PMID 28910633›Full record

ArticleCell host & microbe2017

Host Genetic Control of the Oral Microbiome in Health and Disease.

Andres Gomez, Josh L Espinoza, Derek M Harkins, Pamela Leong, Richard Saffery, Michelle Bockmann, Manolito Torralba, Claire Kuelbs, Rohith Kodukula, Jason Inman and 6 more

Abstract readTwin Study
In one paragraph

Article in Cell host & microbe, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 127 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
127citing papers in PubMed, 2 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

127 citing papers in PubMed, 2 syntheses or guidelines pooled it.

  1. Pooled it
  2. Pooled it
  3. Article
  4. Article
  5. Article
  6. [Age-Related Changes in the Oral Microbiota].Sichuan da xue xue bao. Yi xue ban = Journal of Sichuan University. Medical science edition · 2026
    Review
  7. Article
  8. Article
  9. Integrative Analysis ofDentistry journal · 2026
    Article
  10. Review
  11. Article
  12. Article
  13. Guangdong Biobank Cohort (GDBC) study.European journal of epidemiology · 2026
    Article
  14. Article
  15. A Review of the Impact of Green Tea (Current pharmaceutical design · 2026
    Review
  16. Multicohort external validation ofFrontiers in cellular and infection microbiology · 2026
    Article
  17. Review
  18. Article
  19. Review
  20. Review

67 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

16 authors.

Andres GomezDepartments of Human Biology and Genomic Medicine, J. Craig Venter Institute, La Jolla, CA 92037, USA.
Josh L EspinozaDepartment of Microbial and Environmental Genomics, J. Craig Venter Institute, La Jolla, CA 92037, USA.
Derek M HarkinsDepartments of Human Biology and Genomic Medicine, J. Craig Venter Institute, Rockville, MD 20850, USA.
Pamela LeongMurdoch Children's Research Institute and Department of Pediatrics, University of Melbourne, Royal Children's Hospital, Parkville, VIC 3052, Australia.
Richard SafferyMurdoch Children's Research Institute and Department of Pediatrics, University of Melbourne, Royal Children's Hospital, Parkville, VIC 3052, Australia.
Michelle BockmannSchool of Dentistry, The University of Adelaide, Adelaide, SA 5005, Australia.
Manolito TorralbaDepartments of Human Biology and Genomic Medicine, J. Craig Venter Institute, La Jolla, CA 92037, USA.
Claire KuelbsDepartments of Human Biology and Genomic Medicine, J. Craig Venter Institute, La Jolla, CA 92037, USA.
Rohith KodukulaJCVI Summer Intern Program, Torrey Pines High School, San Diego, CA 9213, USA.
Jason InmanDepartments of Human Biology and Genomic Medicine, J. Craig Venter Institute, Rockville, MD 20850, USA.
Toby HughesSchool of Dentistry, The University of Adelaide, Adelaide, SA 5005, Australia.
Jeffrey M CraigMurdoch Children's Research Institute and Department of Pediatrics, University of Melbourne, Royal Children's Hospital, Parkville, VIC 3052, Australia.
Sarah K HighlanderDepartments of Human Biology and Genomic Medicine, J. Craig Venter Institute, La Jolla, CA 92037, USA.
Marcus B JonesHuman Longevity Institute, La Jolla, CA 92037, USA.
Chris L DupontDepartment of Microbial and Environmental Genomics, J. Craig Venter Institute, La Jolla, CA 92037, USA.
Karen E NelsonDepartments of Human Biology and Genomic Medicine, J. Craig Venter Institute, La Jolla, CA 92037, USA; Departments of Human Biology and Genomic Medicine, J. Craig Venter Institute, Rockville, MD 20850, USA. Electronic address: kenelson@jcvi.org.

Funding

Metagenomics of the Microbiome in Oral Health and DiseaseR01DE019665 · NIDCR · J. CRAIG VENTER INSTITUTE, INC. · PI NELSON, KAREN E. · 2010 to 2014
$3.4M
NIDCR NIH HHS R01 DE019665
6 · The paper itself

Abstract

Host-associated microbial communities are influenced by both host genetics and environmental factors. However, factors controlling the human oral microbiome and their impact on disease remain to be investigated. To determine the combined and relative effects of host genotype and environment on oral microbiome composition and caries phenotypes, we profiled the supragingival plaque microbiome of 485 dizygotic and monozygotic twins aged 5-11. Oral microbiome similarity always increased with shared host genotype, regardless of caries state. Additionally, although most of the variation in the oral microbiome was determined by environmental factors, highly heritable oral taxa were identified. The most heritable oral bacteria were not associated with caries state, did not tend to co-occur with other taxa, and decreased in abundance with age and sugar consumption frequency. Thus, while the human oral microbiome composition is influenced by host genetic background, potentially cariogenic taxa are likely not controlled by genetic factors.

Indexed as

MicrobiotaAge FactorsBacteriaChildChild, PreschoolDental CariesEcosystemFemaleGenetic Predisposition to DiseaseGenotypeHumansMaleMouthPhylogenyTwins16Shuman microbiomeoral microbiometwins

Identifiers

PMID28910633
PMCPMC5733791

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.