Evidence map›Paper›PMID 28910412›Full record

ArticlePloS one2017

Transcriptional responses in the hepatopancreas of Eriocheir sinensis exposed to deltamethrin.

Zongying Yang, Yiliu Zhang, Yingying Jiang, Fengjiao Zhu, Liugen Zeng, Yulan Wang, Xiaoqing Lei, Yi Yao, Yujie Hou, Liangqing Xu and 3 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.0field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 17 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 2 institutions in 1 country.

Zongying YangNational Pathogen Collection Center for Aquatic Animals, Shanghai Ocean University, Shanghai, China.ORCID http://orcid.org/0000-0001-5634-648X
Yiliu ZhangNational Pathogen Collection Center for Aquatic Animals, Shanghai Ocean University, Shanghai, China.
Yingying JiangNational Pathogen Collection Center for Aquatic Animals, Shanghai Ocean University, Shanghai, China.
Fengjiao ZhuNational Pathogen Collection Center for Aquatic Animals, Shanghai Ocean University, Shanghai, China.
Liugen ZengNanchang Academy of Agricultural Sciences, Nanchang, China.
Yulan WangNanchang Academy of Agricultural Sciences, Nanchang, China.
Xiaoqing LeiNanchang Academy of Agricultural Sciences, Nanchang, China.
Yi YaoNanchang Academy of Agricultural Sciences, Nanchang, China.
Yujie HouNanchang Academy of Agricultural Sciences, Nanchang, China.
Liangqing XuNanchang Academy of Agricultural Sciences, Nanchang, China.
Chunxian XiongNanchang Academy of Agricultural Sciences, Nanchang, China.
Xianle YangNational Pathogen Collection Center for Aquatic Animals, Shanghai Ocean University, Shanghai, China.
Kun HuNational Pathogen Collection Center for Aquatic Animals, Shanghai Ocean University, Shanghai, China.
Jiangxi Academy of Agricultural Sciences · CNShanghai Ocean University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Deltamethrin is an important pesticide widely used against ectoparasites. Deltamethrin contamination has resulted in a threat to the healthy breeding of the Chinese mitten crab, Eriocheir sinensis. In this study, we investigated transcriptional responses in the hepatopancreas of E. sinensis exposed to deltamethrin. We obtained 99,087,448, 89,086,478, and 100,117,958 raw sequence reads from control 1, control 2, and control 3 groups, and 92,094,972, 92,883,894, and 92,500,828 raw sequence reads from test 1, test 2, and test 3 groups, respectively. After filtering and quality checking of the raw sequence reads, our analysis yielded 79,228,354, 72,336,470, 81,859,826, 77,649,400, 77,194,276, and 75,697,016 clean reads with a mean length of 150 bp from the control and test groups. After deltamethrin treatment, a total of 160 and 167 genes were significantly upregulated and downregulated, respectively. Gene ontology terms "biological process," "cellular component," and "molecular function" were enriched with respect to cell killing, cellular process, other organism part, cell part, binding, and catalytic. Pathway analysis using the Kyoto Encyclopedia of Genes and Genomes showed that the metabolic pathways were significantly enriched. We found that the CYP450 enzyme system, carboxylesterase, glutathione-S-transferase, and material (including carbohydrate, lipid, protein, and other substances) metabolism played important roles in the metabolism of deltamethrin in the hepatopancreas of E. sinensis. This study revealed differentially expressed genes related to insecticide metabolism and detoxification in E. sinensis for the first time and will help in understanding the toxicity and molecular metabolic mechanisms of deltamethrin in E. sinensis.

Indexed as

AnimalsBrachyuraGene Expression ProfilingGene Expression RegulationGene OntologyGene Regulatory NetworksHepatopancreasHigh-Throughput Nucleotide SequencingMaleMetabolic Networks and PathwaysNitrilesPyrethrinsSequence Analysis, RNAdecamethrinNitrilesPyrethrins

Identifiers

PMID28910412
PMCPMC5599000
OpenAlexW2754220804

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.