ArticlePloS one2017
Genome-wide association mapping of resistance to Phytophthora sojae in a soybean [Glycine max (L.) Merr.] germplasm panel from maturity groups IV and V.
Article in PloS one, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.
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Who cites it
17 citing papers in PubMed.
- Genetic Dissection of Resistance to Pseudomonas amygdali pv. tabaci in Soybean [Glycine max (L.) Merr.] by Linkage Analysis.The plant pathology journal · 2026Article
- Identification and genetic analysis of candidate genes for resistance againstFrontiers in plant science · 2025Article
- The soybean plasma membrane GmDR1 protein conferring broad-spectrum disease and pest resistance regulates several receptor kinases and NLR proteins.Scientific reports · 2024Article
- Common signatures of selection reveal target loci for breeding across soybean populations.The plant genome · 2024Article
- Genomic regions associated with resistance to soybean rust (Phakopsora pachyrhizi) under field conditions in soybean germplasm accessions from Japan, Indonesia and Vietnam.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2022Article
- Genome-Wide Association Study of Partial Resistance toCurrent issues in molecular biology · 2022Article
- Machine-Learning-Based Genome-Wide Association Studies for Uncovering QTL Underlying Soybean Yield and Its Components.International journal of molecular sciences · 2022Article
- Mapping of partial resistance to Phytophthora sojae in soybean PIs using whole-genome sequencing reveals a major QTL.The plant genome · 2022Article
- Sequencing the USDA core soybean collection reveals gene loss during domestication and breeding.The plant genome · 2022Article
- Progress and prospectus in genetics and genomics ofFrontiers in genetics · 2022Review
- Genome-Wide Association Study and Genomic Selection for Proteinogenic Methionine in Soybean Seeds.Frontiers in plant science · 2022Article
- Mining germplasm panels and phenotypic datasets to identify loci for resistance to Phytophthora sojae in soybean.The plant genome · 2021Article
- Genome-Wide Association Studies of Soybean Yield-Related Hyperspectral Reflectance Bands Using Machine Learning-Mediated Data Integration Methods.Frontiers in plant science · 2021Article
- Fine mapping of a Phytophthora-resistance locus RpsGZ in soybean using genotyping-by-sequencing.BMC genomics · 2020Article
- Genetic Mapping and Molecular Characterization of a Broad-spectrumInternational journal of molecular sciences · 2019Article
- Genome Wide Association Study and Genomic Selection of Amino Acid Concentrations in Soybean Seeds.Frontiers in plant science · 2019Article
- Fine Mapping and Identification of a Novel Phytophthora Root Rot Resistance LocusFrontiers in plant science · 2018Article
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Authors and funding
6 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Phytophthora sojae, an oomycete pathogen of soybean, causes stem and root rot, resulting in annual economic loss up to $2 billion worldwide. Varieties with P. sojae resistance are environmental friendly to effectively reduce disease damages. In order to improve the resistance of P. sojae and broaden the genetic diversity in Southern soybean cultivars and germplasm in the U.S., we established a P. sojae resistance gene pool that has high genetic diversity, and explored genomic regions underlying the host resistance to P. sojae races 1, 3, 7, 17 and 25. A soybean germplasm panel from maturity groups (MGs) IV and V including 189 accessions originated from 10 countries were used in this study. The panel had a high genetic diversity compared to the 6,749 accessions from MGs IV and V in USDA Soybean Germplasm Collection. Based on disease evaluation dataset of these accessions inoculated with P. sojae races 1, 3, 7, 17 and 25, which are publically available, five accessions in this panel were resistant to all races. Genome-wide association analysis identified a total of 32 significant SNPs, which were clustered in resistance-associated genomic regions, among those, ss715619920 was only 3kb away from the gene Glyma.14g087500, a subtilisin protease. Gene expression analysis showed that the gene was down-regulated more than 4 fold (log2 fold > 2.2) in response to P. sojae infection. The identified molecular markers and genomic regions that are associated with the disease resistance in this gene pool will greatly assist the U.S. Southern soybean breeders in developing elite varieties with broad genetic background and P. sojae resistance.
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