Evidence map›Paper›PMID 28910336›Full record

ArticlePloS one2017

Application of unsupervised analysis techniques to lung cancer patient data.

Chip M Lynch, Victor H van Berkel, Hermann B Frieboes

Abstract read
In one paragraph

Article in PloS one, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Artificial intelligence and machine learning for medical imaging: A technology review.Physica medica : PM : an international journal devoted to the applications of physics to medicine and biology : official journal of the Italian Association of Biomedical Physics (AIFB) · 2021
    Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Machine learning in oncology: a review.Ecancermedicalscience · 2020
    Review
  13. Lung Cancer Survival Prediction via Machine Learning Regression, Classification, and Statistical Techniques.Proceedings of the ... IEEE International Symposium on Signal Processing and Information Technology. IEEE International Symposium on Signal Processing and Information Technology · 2018
    Article
  14. Article
  15. Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Chip M LynchDepartment of Computer Engineering and Computer Science, University of Louisville, Louisville, KY, United States of America.
Victor H van BerkelDepartment of Cardiovascular and Thoracic Surgery, University of Louisville, Louisville, KY, United States of America.
Hermann B FrieboesDepartment of Bioengineering, University of Louisville, Louisville, KY, United States of America.ORCID http://orcid.org/0000-0001-5959-4286

Funding

Integrated framework to predict chemotherapy response post lung tumor resectionR15CA203605 · NCI · UNIVERSITY OF LOUISVILLE · PI FRIEBOES, HERMANN · 2016 to 2016
$462k
NCI NIH HHS R15 CA203605
6 · The paper itself

Abstract

This study applies unsupervised machine learning techniques for classification and clustering to a collection of descriptive variables from 10,442 lung cancer patient records in the Surveillance, Epidemiology, and End Results (SEER) program database. The goal is to automatically classify lung cancer patients into groups based on clinically measurable disease-specific variables in order to estimate survival. Variables selected as inputs for machine learning include Number of Primaries, Age, Grade, Tumor Size, Stage, and TNM, which are numeric or can readily be converted to numeric type. Minimal up-front processing of the data enables exploring the out-of-the-box capabilities of established unsupervised learning techniques, with little human intervention through the entire process. The output of the techniques is used to predict survival time, with the efficacy of the prediction representing a proxy for the usefulness of the classification. A basic single variable linear regression against each unsupervised output is applied, and the associated Root Mean Squared Error (RMSE) value is calculated as a metric to compare between the outputs. The results show that self-ordering maps exhibit the best performance, while k-Means performs the best of the simpler classification techniques. Predicting against the full data set, it is found that their respective RMSE values (15.591 for self-ordering maps and 16.193 for k-Means) are comparable to supervised regression techniques, such as Gradient Boosting Machine (RMSE of 15.048). We conclude that unsupervised data analysis techniques may be of use to classify patients by defining the classes as effective proxies for survival prediction.

Indexed as

AdultAgedAged, 80 and overCluster AnalysisDatabases, FactualFemaleHumansLung NeoplasmsMaleMiddle AgedNeoplasm GradingNeoplasm StagingSEER ProgramSurvival AnalysisTumor BurdenUnsupervised Machine Learning

Identifiers

PMID28910336
PMCPMC5598970

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.