ArticleBotanical studies2017
Complete chloroplast genome sequences of two endangered Phoebe (Lauraceae) species.
Article in Botanical studies, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.
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24 citing papers in PubMed.
- Exploring the Mitochondrial Genomes ofEcology and evolution · 2026Article
- Structural characteristics of the Phoebe hui chloroplast genome and phylogenetic analyses of Phoebe plants.BMC genomics · 2026Article
- Chromosome-level genome assembly of Phoebe chekiangensis, an endemic and endangered tree in east Asia.Scientific data · 2026Article
- Integrating phylogenomic and morphological evidence to solve the taxonomy of Phoebe legendrei (Lauraceae) and closely related species.BMC plant biology · 2025Article
- DNA Barcoding Provides Taxonomic Clues for Identifying Five EndangeredPlants (Basel, Switzerland) · 2025Article
- Plastome ofFrontiers in plant science · 2025Article
- DEFGermplasm: a comprehensive digital platform for forest genomic and phenotype data integration.Forestry research · 2025Article
- Paclobutrazol Promotes Root Development of Difficult-to-Root Plants by Coordinating Auxin and Abscisic Acid Signaling Pathways inInternational journal of molecular sciences · 2023Article
- Comparative genomics analysis of endangered wild EgyptianFrontiers in genetics · 2023Article
- Article
- The Complete Chloroplast Genome ofGenes · 2022Article
- The Complete Chloroplast Genome Sequence ofCurrent genomics · 2022Article
- A comparative analysis of complete chloroplast genomes of seven Ocotea species (Lauraceae) confirms low sequence divergence within the Ocotea complex.Scientific reports · 2022Article
- The chloroplast genome of black pepper (Frontiers in plant science · 2022Article
- Comparative Analysis of Chloroplast Genomes of Four Medicinal Capparaceae Species: Genome Structures, Phylogenetic Relationships and Adaptive Evolution.Plants (Basel, Switzerland) · 2021Article
- Comparative analysis and phylogenetic investigation of Hong Kong Ilex chloroplast genomes.Scientific reports · 2021Article
- Complete Chloroplast Genome ofPlants (Basel, Switzerland) · 2021Article
- TheHorticulture research · 2020Article
- Comparison of the CompletePlants (Basel, Switzerland) · 2019Article
- Comparison of Four Complete Chloroplast Genomes of Medicinal and Ornamental Meconopsis Species: Genome Organization and Species Discrimination.Scientific reports · 2019Article
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5 authors.
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Abstract
backgroundPhoebe (Lauraceae) comprises of evergreen trees or shrubs with approximately 100 species, distributed in tropical and subtropical Asia and Neotropical America. A total of 34 species and three varieties occur in China. Despite of economic and ecological value, only limited genomic resources are available for this genus.
resultsWe sequenced the two complete chloroplast (cp) genomes of Phoebe chekiangensis and P. bournei using Illumina sequencing technology via a combined strategy of de novo and reference-guided assembly. We also performed comparative analyses with the cp genomes of P. sheareri and P. sheareri var. oineiensis previously reported. The chloroplast genomes of P. chekiangensis and P. bournei identically contain 112 genes consisting of 78 protein coding genes, 30 tRNA genes, and 4 rRNA genes, with the size of 152,849 and 152,853 bp, respectively. From the two chloroplast genomes, 131 SSRs were identified and 12 different SSRs located in five protein coding genes. The analysis showed the extremely conserved structure of chloroplast genomes with surprisingly little variations at the LSC/IR and SSC/IR boundaries. Moreover, the mean nucleotide diversity was found to be 0.162% for 77 regions, suggesting an extraordinarily low level of sequence divergence. Four highest divergent regions (trnH-psbA, rps14-trnT, petA-psbJ, ccsA-ndhD) with the percentage of nucleotide diversity higher than 0.50% were identified, which had potential use for species identification and phylogenetic studies.
conclusionThis study will facilitate our understanding of population genetics, phylogenetic relationship and plant evolution of Phoebe species.
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