Evidence map›Paper›PMID 28905220›Full record

ArticleNeuromolecular medicine2017

Haplotype Study in SCA10 Families Provides Further Evidence for a Common Ancestral Origin of the Mutation.

Giovana B Bampi, Rafael Bisso-Machado, Tábita Hünemeier, Tailise C Gheno, Gabriel V Furtado, Diego Veliz-Otani, Mario Cornejo-Olivas, Pillar Mazzeti, Maria Cátira Bortolini, Laura B Jardim and 2 more

Open access · greenAbstract readComparative Study
PubMed Publisher
In one paragraph

Article in Neuromolecular medicine, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed, 1 pooled it
1.1field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 1 synthesis or guideline pooled it, 26 citations in OpenAlex.

  1. Pooled it
  2. Spinocerebellar Ataxia Type 10 (SCA 10) in Brazil.Cerebellum (London, England) · 2025
    Review
  3. Hereditary Ataxias in Argentina.Cerebellum (London, England) · 2025
    Review
  4. Article
  5. Article
  6. Article
  7. Review
  8. Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Genetics and genomics in Peru: Clinical and research perspective.Molecular genetics & genomic medicine · 2018
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 2 countries.

Giovana B BampiDepartment of Genetics, Universidade Federal do Rio Grande do Sul, Porto Alegre, Brazil.
Rafael Bisso-MachadoCentro Universitario de Tacuarembó, Universidad de la República, Tacuarembó, Uruguay.
Tábita HünemeierDepartamento de Genética e Biologia Evolutiva, Instituto de Biociências, Universidade de São Paulo, São Paulo, Brazil.
Tailise C GhenoDepartment of Genetics, Universidade Federal do Rio Grande do Sul, Porto Alegre, Brazil.
Gabriel V FurtadoDepartment of Genetics, Universidade Federal do Rio Grande do Sul, Porto Alegre, Brazil.
Diego Veliz-OtaniNeurogenetics Research Center, Instituto Nacional de Ciencias Neurologicas, Lima, Peru.
Mario Cornejo-OlivasNeurogenetics Research Center, Instituto Nacional de Ciencias Neurologicas, Lima, Peru.
Pillar MazzetiNeurogenetics Research Center, Instituto Nacional de Ciencias Neurologicas, Lima, Peru.
Maria Cátira BortoliniDepartment of Genetics, Universidade Federal do Rio Grande do Sul, Porto Alegre, Brazil.
Laura B JardimDepartment of Genetics, Universidade Federal do Rio Grande do Sul, Porto Alegre, Brazil.
Maria Luiza Saraiva-PereiraDepartment of Genetics, Universidade Federal do Rio Grande do Sul, Porto Alegre, Brazil. mlpereira@hcpa.edu.br.ORCID http://orcid.org/0000-0003-3905-9563
Rede Neurogenetica
Universidade Federal do Rio Grande do Sul · BRInstituto Nacional de Ciencias NeurológicasUniversidade de São Paulo · BR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Spinocerebellar ataxia type 10 (SCA10) is an autosomal dominant neurodegenerative disorder characterized by progressive cerebellar ataxia and epilepsy. The disease is caused by a pentanucleotide ATTCT expansion in intron 9 of the ATXN10 gene on chromosome 22q13.3. SCA10 has shown a geographical distribution throughout America with a likely degree of Amerindian ancestry from different countries so far. Currently available data suggest that SCA10 mutation might have spread out early during the peopling of the Americas. However, the ancestral origin of SCA10 mutation remains under speculation. Samples of SCA10 patients from two Latin American countries were analysed, being 16 families from Brazil (29 patients) and 21 families from Peru (27 patients) as well as 49 healthy individuals from Indigenous Quechua population and 51 healthy Brazilian individuals. Four polymorphic markers spanning a region of 5.2 cM harbouring the ATTCT expansion were used to define the haplotypes, which were genotyped by different approaches. Our data have shown that 19-CGGC-14 shared haplotype was found in 47% of Brazilian and in 63% of Peruvian families. Frequencies from both groups are not statistically different from Quechua controls (57%), but they are statistically different from Brazilian controls (12%) (p < 0.001). The most frequent expanded haplotype in Quechuas, 19-15-CGGC-14-10, is found in 50% of Brazilian and in 65% of Peruvian patients with SCA10. These findings bring valuable evidence that ATTCT expansion may have arisen in a Native American chromosome.

Indexed as

Founder EffectMutationAfricaAtaxin-10Black PeopleBrazilDNA Repeat ExpansionEuropeGene FrequencyHaplotypesHuman MigrationHumansIndians, South AmericanPeruSpinocerebellar AtaxiasWhite PeopleAtaxin-10ATXN10 protein, humanAmerindiansAncestral originATXN10Founder effectHaplotypesSCA10

Identifiers

PMID28905220
OpenAlexW2754620684

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.