Evidence map›Paper›PMID 28904385›Full record

ArticleScientific reports2017

Rapid Discovery of De Novo Deleterious Mutations in Cattle Enhances the Value of Livestock as Model Species.

E Bourneuf, P Otz, H Pausch, V Jagannathan, P Michot, C Grohs, G Piton, S Ammermüller, M-C Deloche, S Fritz and 39 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 46 papers.

0numbers the graph read from it
0cells of the map it votes in
46citing papers in PubMed
6.6field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

46 citing papers in PubMed, 85 citations in OpenAlex.

  1. Effect of methylation on genome mutability in cattle.Genetics, selection, evolution : GSE · 2026
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  17. Molecular genetic variation of animals and plants under domestication.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Review
  18. Article
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  20. Severe osteogenesis imperfecta caused byJournal of veterinary diagnostic investigation : official publication of the American Association of Veterinary Laboratory Diagnosticians, Inc · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

49 authors at 18 institutions in 6 countries.

E BourneufGABI, INRA, AgroParisTech, Université Paris-Saclay, 78350, Jouy-en-Josas, France.
P OtzVeterinary School of Lyon (VetAgro Sup), Cattle Pathology Unit, Marcy l'Etoile, France.
H PauschChair of Animal Breeding, Technische Universitaet Muenchen, Freising-Weihenstephan, Germany.
V JagannathanInstitute of Genetics, Vetsuisse Faculty, University of Bern, Bremgartenstrasse 109a, 3001, Bern, Switzerland.
P MichotGABI, INRA, AgroParisTech, Université Paris-Saclay, 78350, Jouy-en-Josas, France.
C GrohsGABI, INRA, AgroParisTech, Université Paris-Saclay, 78350, Jouy-en-Josas, France.
G PitonGABI, INRA, AgroParisTech, Université Paris-Saclay, 78350, Jouy-en-Josas, France.
S AmmermüllerChair of Animal Breeding, Technische Universitaet Muenchen, Freising-Weihenstephan, Germany.
M-C DelocheGABI, INRA, AgroParisTech, Université Paris-Saclay, 78350, Jouy-en-Josas, France.
S FritzGABI, INRA, AgroParisTech, Université Paris-Saclay, 78350, Jouy-en-Josas, France.
H LeclercGABI, INRA, AgroParisTech, Université Paris-Saclay, 78350, Jouy-en-Josas, France.
C PéchouxGABI, INRA, AgroParisTech, Université Paris-Saclay, 78350, Jouy-en-Josas, France.
A BoukadiriGABI, INRA, AgroParisTech, Université Paris-Saclay, 78350, Jouy-en-Josas, France.
C HozéGABI, INRA, AgroParisTech, Université Paris-Saclay, 78350, Jouy-en-Josas, France.
R SaintilanGABI, INRA, AgroParisTech, Université Paris-Saclay, 78350, Jouy-en-Josas, France.
F CréchetGABI, INRA, AgroParisTech, Université Paris-Saclay, 78350, Jouy-en-Josas, France.
M MoscaUniversité de Lyon, Veterinary School of Lyon (VetAgro Sup), UPSP 2011-03-101 Interactions Cellules Environnement, Marcy l'Etoile, France.
D SegelkeVereinigte Informationssysteme Tierhaltung w.V., Verden, Germany.
F GuillaumeGABI, INRA, AgroParisTech, Université Paris-Saclay, 78350, Jouy-en-Josas, France.
S BouetGABI, INRA, AgroParisTech, Université Paris-Saclay, 78350, Jouy-en-Josas, France.
A BaurGABI, INRA, AgroParisTech, Université Paris-Saclay, 78350, Jouy-en-Josas, France.
A VasilescuLABOGENA, Jouy-en-Josas, France.
L GenestoutLABOGENA, Jouy-en-Josas, France.
A ThomasVeterinary School of Lyon (VetAgro Sup), Imaging Department, Marcy l'Etoile, France.
A Allais-BonnetGABI, INRA, AgroParisTech, Université Paris-Saclay, 78350, Jouy-en-Josas, France.
D RochaGABI, INRA, AgroParisTech, Université Paris-Saclay, 78350, Jouy-en-Josas, France.
M-A ColleINRA, UMR703 Animal Pathophysiology and Biotherapy for Muscle and Nervous system Diseases, Atlantic Gene Therapies, Nantes, France.
C KloppINRA, Sigenae Bioinformatics Group, UR875, 31320, Castanet-Tolosan, France.
D EsquerréGenPhySE, Université de Toulouse, INRA, INPT, INP-ENVT, 31320, Castanet Tolosan, France.
C WurmserChair of Animal Breeding, Technische Universitaet Muenchen, Freising-Weihenstephan, Germany.
K FlisikowskiChair of Animal Biotechnology, Technische Universität München, Freising-Weihenstephan, Germany.
H SchwarzenbacherZuchtData GmbH, Vienna, Austria.
J BurgstallerClinic for Ruminants, University of Veterinary Medicine Vienna, Vienna, Austria.ORCID 0000-0002-3668-8893
M BrügmannLower Saxony State Office for Consumer Protection and Food Safety, Department of Pathology, Oldenburg, Germany.
E DietschiInstitute of Genetics, Vetsuisse Faculty, University of Bern, Bremgartenstrasse 109a, 3001, Bern, Switzerland.ORCID 0000-0002-3181-6083
N RudolphLandesuntersuchungsanstalt für das Gesundheits- und Veterinärwesen Sachsen, Bahnhofstrasse 60, 04158, Leipzig, Germany.
M FreickVeterinary Practice Zettlitz, Strasse der Jugend 68, 09306, Zettlitz, Germany.
S BarbeyINRA, UE0326, Domaine expérimental du Pin-au-Haras, Exmes, France.
G FayolleUMOTEST, Ceyzeriat, France.
C Danchin-BurgeInstitut de l'Elevage, Paris, France.
L SchiblerALLICE, Paris, France.
B Bed'HomGABI, INRA, AgroParisTech, Université Paris-Saclay, 78350, Jouy-en-Josas, France.
B J HayesAgriBio, Centre for AgriBioscience, Biosciences Research, DEDJTR, Bundoora, Australia.
H D DaetwylerAgriBio, Centre for AgriBioscience, Biosciences Research, DEDJTR, Bundoora, Australia.
R FriesChair of Animal Breeding, Technische Universitaet Muenchen, Freising-Weihenstephan, Germany.
D BoichardGABI, INRA, AgroParisTech, Université Paris-Saclay, 78350, Jouy-en-Josas, France.ORCID 0000-0003-0361-2961
D PinUniversité de Lyon, Veterinary School of Lyon (VetAgro Sup), UPSP 2011-03-101 Interactions Cellules Environnement, Marcy l'Etoile, France.ORCID 0000-0001-7424-0013
C DrögemüllerInstitute of Genetics, Vetsuisse Faculty, University of Bern, Bremgartenstrasse 109a, 3001, Bern, Switzerland.ORCID 0000-0001-9773-522X
A CapitanGABI, INRA, AgroParisTech, Université Paris-Saclay, 78350, Jouy-en-Josas, France. aurelien.capitan@jouy.inra.fr.
AgroParisTech · FRUniversity of Bern · CHÉcole Nationale Vétérinaire de Toulouse · FRLaboratoire d'Analyses Génétiques pour les Espèces Animales · FRUniversité Claude Bernard Lyon 1 · FRDépartement mathématiques, informatique, sciences de la donnée et technologies du numérique · FRGene Therapy Laboratory · FRInstitut de l’Elevage · FRInstitut National de la Recherche Agronomique · MALandesuntersuchungsanstalt Sachsen · DELa Trobe University · AUL'Hôpital Nord Franche-Comté · FRLower Saxony State Office for Consumer Protection and Food Safety · DESBA Research · ATThe University of Queensland · AUUniversity of Veterinary Medicine Vienna · ATVetAgro Sup · FRWeihenstephan-Triesdorf University of Applied Sciences · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In humans, the clinical and molecular characterization of sporadic syndromes is often hindered by the small number of patients and the difficulty in developing animal models for severe dominant conditions. Here we show that the availability of large data sets of whole-genome sequences, high-density SNP chip genotypes and extensive recording of phenotype offers an unprecedented opportunity to quickly dissect the genetic architecture of severe dominant conditions in livestock. We report on the identification of seven dominant de novo mutations in CHD7, COL1A1, COL2A1, COPA, and MITF and exploit the structure of cattle populations to describe their clinical consequences and map modifier loci. Moreover, we demonstrate that the emergence of recessive genetic defects can be monitored by detecting de novo deleterious mutations in the genome of bulls used for artificial insemination. These results demonstrate the attractiveness of cattle as a model species in the post genomic era, particularly to confirm the genetic aetiology of isolated clinical case reports in humans.

Indexed as

Genetic Association StudiesMutationPhenotypeAnimalsCattleDisease Models, AnimalDNA Mutational AnalysisGenetic Diseases, InbornGenetic Predisposition to DiseaseGenomicsHumansLivestockPedigreeWhole Genome Sequencing

Identifiers

PMID28904385
PMCPMC5597596
OpenAlexW2753503144

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.