Evidence map›Paper›PMID 28904337›Full record

ArticleScientific reports2017

Toxoplasma Modulates Signature Pathways of Human Epilepsy, Neurodegeneration & Cancer.

Huân M Ngô, Ying Zhou, Hernan Lorenzi, Kai Wang, Taek-Kyun Kim, Yong Zhou, Kamal El Bissati, Ernest Mui, Laura Fraczek, Seesandra V Rajagopala and 22 more

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 64 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
64citing papers in PubMed, 1 pooled it
9.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

64 citing papers in PubMed, 1 synthesis or guideline pooled it, 111 citations in OpenAlex.

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  16. Inhibition ofJournal of enzyme inhibition and medicinal chemistry · 2022
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  17. Heliyon · 2022
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  18. Pathogens and global health · 2022
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  19. Inhibition ofFrontiers in cellular and infection microbiology · 2022
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  20. Review

4 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

32 authors at 13 institutions in 4 countries.

Huân M NgôThe University of Chicago, Chicago, IL, 60637, USA.
Ying ZhouThe University of Chicago, Chicago, IL, 60637, USA.
Hernan LorenziJ Craig Venter Institute, Rockville, MD, 20850, USA.
Kai WangInstitute for Systems Biology, Seattle, WA, 98109, USA.
Taek-Kyun KimInstitute for Systems Biology, Seattle, WA, 98109, USA.
Yong ZhouInstitute for Systems Biology, Seattle, WA, 98109, USA.
Kamal El BissatiThe University of Chicago, Chicago, IL, 60637, USA.
Ernest MuiThe University of Chicago, Chicago, IL, 60637, USA.
Laura FraczekThe University of Chicago, Chicago, IL, 60637, USA.ORCID http://orcid.org/0000-0003-2501-7522
Seesandra V RajagopalaJ Craig Venter Institute, Rockville, MD, 20850, USA.
Craig W RobertsUniversity of Strathclyde, Glasgow, G1 1XQ, United Kingdom.ORCID http://orcid.org/0000-0002-0653-835X
Fiona L HenriquezThe University of Chicago, Chicago, IL, 60637, USA.
Alexandre MontpetitGenome Quebec, Montréal, QC H3B 1S6, Canada; McGill University, Montréal, QC H3A 0G4, Canada.
Jenefer M BlackwellDepartment of Pathology, University of Cambridge, Cambridge, CB2 1QP, United Kingdom.
Sarra E JamiesonTelethon Kids Institute, The University of Western Australia, Perth, Australia.
Kelsey WheelerThe University of Chicago, Chicago, IL, 60637, USA.
Ian J BegemanThe University of Chicago, Chicago, IL, 60637, USA.
Carlos Naranjo-GalvisThe University of Chicago, Chicago, IL, 60637, USA.ORCID http://orcid.org/0000-0002-9398-7443
Ney Alliey-RodriguezThe University of Chicago, Chicago, IL, 60637, USA.ORCID http://orcid.org/0000-0001-8594-5676
Roderick G DavisUniversity of Illinois-Chicago, Chicago, IL, 60607, USA.
Liliana SoroceanuCalifornia Pacific Medical Center, San Francisco, CA, 94114, USA.
Charles CobbsCalifornia Pacific Medical Center, San Francisco, CA, 94114, USA.
Dennis A SteindlerJM USDA Human Nutrition Research Center on Aging, Tufts University, Boston, MA, 02111, USA.
Kenneth BoyerRush University Medical Center, Chicago, IL, 60612, USA.
A Gwendolyn NobleNorthwestern University, Feinberg School of Medicine, Chicago, IL, 60611, USA.
Charles N SwisherNorthwestern University, Feinberg School of Medicine, Chicago, IL, 60611, USA.
Peter T HeydemannRush University Medical Center, Chicago, IL, 60612, USA.
Peter RabiahNorthshore University Health System, Evanston, IL, 60201, USA.
Shawn WithersThe University of Chicago, Chicago, IL, 60637, USA.
Patricia SoteropoulosRutgers University, Newark, New Jersey, 07101, USA.
Leroy HoodInstitute for Systems Biology, Seattle, WA, 98109, USA.
Rima McLeodThe University of Chicago, Chicago, IL, 60637, USA. rmcleod@uchicago.edu.
University of Chicago · USInstitute for Systems Biology · USNorthwestern University · USCalifornia Pacific Medical Center · USJ. Craig Venter Institute · USRush University Medical Center · USThe Kids Research Institute Australia · AUGenome Canada · CANorthShore University HealthSystem · USRutgers, The State University of New Jersey · USTufts University · USUniversity of Illinois Chicago · USUniversity of Strathclyde · GB

Funding

The J. Craig Venter Institute Genome Center for Infectious DiseasesU19AI110819 · NIAID · J. CRAIG VENTER INSTITUTE, INC. · PI NELSON, KAREN E., NIERMAN, WILLIAM CHARLES · 2014 to 2018
$29.7M
Optimizing Inhibitors of T. gondii ENRU01AI082180 · NIAID · UNIVERSITY OF CHICAGO · PI MCLEOD, RIMA L · 2009 to 2013
$4.4M
Towards a Vaccine to Prevent ToxoplasmosisU01AI077887 · NIAID · UNIVERSITY OF CHICAGO · PI MCLEOD, RIMA L · 2008 to 2012
$4.2M
TREATMENT OF CONGENITAL TOXOPLASMOSISR01AI027530 · NIAID · UNIVERSITY OF CHICAGO · PI MCLEOD, RIMA L · 1989 to 2010
$2.8M
Innate Immune Receptors for Toxoplasma gondiiR01AI071319 · NIAID · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI GAZZINELLI, RICARDO TOSTES · 2006 to 2010
$2.7M
NIAID NIH HHS HHSN272200700058CNIAID NIH HHS HHSN272200900007CNIAID NIH HHS HHSN272201200026CNIAID NIH HHS R01 AI027530NIAID NIH HHS R01 AI071319NIAID NIH HHS U01 AI077887NIAID NIH HHS U01 AI082180NIAID NIH HHS U19 AI110819
6 · The paper itself

Abstract

One third of humans are infected lifelong with the brain-dwelling, protozoan parasite, Toxoplasma gondii. Approximately fifteen million of these have congenital toxoplasmosis. Although neurobehavioral disease is associated with seropositivity, causality is unproven. To better understand what this parasite does to human brains, we performed a comprehensive systems analysis of the infected brain: We identified susceptibility genes for congenital toxoplasmosis in our cohort of infected humans and found these genes are expressed in human brain. Transcriptomic and quantitative proteomic analyses of infected human, primary, neuronal stem and monocytic cells revealed effects on neurodevelopment and plasticity in neural, immune, and endocrine networks. These findings were supported by identification of protein and miRNA biomarkers in sera of ill children reflecting brain damage and T. gondii infection. These data were deconvoluted using three systems biology approaches: "Orbital-deconvolution" elucidated upstream, regulatory pathways interconnecting human susceptibility genes, biomarkers, proteomes, and transcriptomes. "Cluster-deconvolution" revealed visual protein-protein interaction clusters involved in processes affecting brain functions and circuitry, including lipid metabolism, leukocyte migration and olfaction. Finally, "disease-deconvolution" identified associations between the parasite-brain interactions and epilepsy, movement disorders, Alzheimer's disease, and cancer. This "reconstruction-deconvolution" logic provides templates of progenitor cells' potentiating effects, and components affecting human brain parasitism and diseases.

Identifiers

PMID28904337
PMCPMC5597608
OpenAlexW2756432215

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.