Evidence map›Paper›PMID 28900747›Full record

ArticleInternational journal of biometeorology2017

Transcriptome analysis and identification of significantly differentially expressed genes in Holstein calves subjected to severe thermal stress.

Krishnamoorthy Srikanth, Eunjin Lee, Anam Kwan, Youngjo Lim, Junyep Lee, Gulwon Jang, Hoyoung Chung

Abstract read
PubMed Publisher
In one paragraph

Article in International journal of biometeorology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
2.6field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 24 citations in OpenAlex.

  1. EngineeredMolecular therapy. Oncology · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Krishnamoorthy SrikanthAnimal Genomics and Bioinformatics Division, National Institute of Animal Science, 1500, K & P road, Iseo, Wanju, JB, 55365, South Korea.
Eunjin LeeAnimal Genomics and Bioinformatics Division, National Institute of Animal Science, 1500, K & P road, Iseo, Wanju, JB, 55365, South Korea.
Anam KwanAnimal Genomics and Bioinformatics Division, National Institute of Animal Science, 1500, K & P road, Iseo, Wanju, JB, 55365, South Korea.
Youngjo LimAnimal Genomics and Bioinformatics Division, National Institute of Animal Science, 1500, K & P road, Iseo, Wanju, JB, 55365, South Korea.
Junyep LeeEnvironmental Science Division, National Institute of Animal Science, 1500, K & P road, Iseo, Wanju, JB, 55365, South Korea.
Gulwon JangAnimal Genomics and Bioinformatics Division, National Institute of Animal Science, 1500, K & P road, Iseo, Wanju, JB, 55365, South Korea.
Hoyoung ChungAnimal Genomics and Bioinformatics Division, National Institute of Animal Science, 1500, K & P road, Iseo, Wanju, JB, 55365, South Korea. chung1333@hanmail.net.
National Institute of Animal Science · KR

Funding

National Academy of Agricultural Science PJ01005002
6 · The paper itself

Abstract

RNA-Seq analysis was used to characterize transcriptome response of Holstein calves to thermal stress. A total of eight animals aged between 2 and 3 months were randomly selected and subjected to thermal stress corresponding to a temperature humidity index of 95 in an environmentally controlled house for 12 h consecutively for 3 days. A set of 15,787 unigenes were found to be expressed and after a threshold of threefold change, and a Q value <0.05; 502, 394, and 376 genes were found to be differentially expressed on days 1, 2, and 3 out of which 343, 261 and 256 genes were upregulated and 159, 133, and 120 genes were downregulated. Only 356 genes out of these were expressed on all 3 days, and only they were considered as significantly differentially expressed. KEGG pathway analysis revealed that ten pathways were significantly enriched; the top two among them were protein processing in endoplasmic reticulum and MAPK signaling pathways. These results suggest that thermal stress triggered a complex response in Holstein calves and the animals adjusted their physiological and metabolic processes to survive. Many of the genes identified in this study have not been previously reported to be involved in thermal stress response. The results of this study extend our understanding of the animal's response to thermal stress and some of the identified genes may prove useful in the efforts to breed Holstein cattle with superior thermotolerance, which might help in minimizing production loss due to thermal stress.

Indexed as

AnimalsBody TemperatureCattleGene Expression ProfilingGene Expression RegulationHeat-Shock ProteinsHeat-Shock ResponseHot TemperatureMaleMitogen-Activated Protein KinasesTranscription FactorsHeat-Shock ProteinsMitogen-Activated Protein KinasesTranscription FactorsDifferentially expressed genesGlobal warmingHolstein calvesThermal stress

Identifiers

PMID28900747
OpenAlexW2754955735

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.