Evidence map›Paper›PMID 28900278›Full record

ArticleScientific reports2017

Function Coupling Mechanism of PhuS and HemO in Heme Degradation.

Michael J Y Lee, Ye Wang, Yafei Jiang, Xichen Li, Jianqiu Ma, Hongwei Tan, Keegan Turner-Wood, Mona N Rahman, Guangju Chen, Zongchao Jia

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.4field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 2 countries.

Michael J Y LeeDepartment of Biomedical and Molecular Sciences, Queen's University, Kingston, Ontario, K7L 3N6, Canada.
Ye WangCollege of Chemistry, Beijing Normal University, 100875, Beijing, China.
Yafei JiangCollege of Chemistry, Beijing Normal University, 100875, Beijing, China.
Xichen LiCollege of Chemistry, Beijing Normal University, 100875, Beijing, China.
Jianqiu MaCollege of Chemistry, Beijing Normal University, 100875, Beijing, China.
Hongwei TanCollege of Chemistry, Beijing Normal University, 100875, Beijing, China. hongwei.tan@bnu.edu.cn.ORCID 0000-0002-1376-6019
Keegan Turner-WoodDepartment of Biomedical and Molecular Sciences, Queen's University, Kingston, Ontario, K7L 3N6, Canada.
Mona N RahmanDepartment of Biomedical and Molecular Sciences, Queen's University, Kingston, Ontario, K7L 3N6, Canada.
Guangju ChenCollege of Chemistry, Beijing Normal University, 100875, Beijing, China.
Zongchao JiaDepartment of Biomedical and Molecular Sciences, Queen's University, Kingston, Ontario, K7L 3N6, Canada. jia@queensu.ca.ORCID 0000-0002-9322-9394
Beijing Normal University · CNQueen's University · CA

Funding

CIHR
6 · The paper itself

Abstract

Most bacteria possess only one heme-degrading enzyme for obtaining iron, however few bacteria such as Pseudomonas aeruginosa express two, namely PhuS and HemO. While HemO is a well-known heme oxygenase, previously we discovered that PhuS also possesses heme degradation activity and generates verdoheme, an intermediate of heme breakdown. To understand the coexistence of these two enzymes, using the DFT calculation we reveal that PhuS effectively enhances heme degradation through its participation in heme hydroxylation, the rate limiting reaction. Heme is converted to verdoheme in this reaction and the energy barrier for PhuS is substantially lower than for HemO. Thus, HemO is mainly involved in the ring opening reaction which converts verdoheme to biliverdin and free iron. Our kinetics experiments show that, in the presence of both PhuS and HemO, complete degradation of heme to biliverdin is enhanced. We further show that PhuS is more active than HemO using heme as a substrate and generates more CO. Combined experimental and theoretical results directly identify function coupling of this two-enzyme system, resulting in more efficient heme breakdown and utilization.

Indexed as

CatalysisHemeHeme Oxygenase (Decyclizing)HydroxylationModels, MolecularMolecular StructureProtein ConformationProteolysisHemeHeme Oxygenase (Decyclizing)

Identifiers

PMID28900278
PMCPMC5596023
OpenAlexW2753614279

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.