Evidence map›Paper›PMID 28900269›Full record

ArticleScientific reports2017

Predicted effects of observed changes in the mRNA and microRNA transcriptome of lung neutrophils during S. pneumoniae pneumonia in mice.

John C Gomez, Hong Dang, Matthew Kanke, Robert S Hagan, Jason R Mock, Samir N P Kelada, Praveen Sethupathy, Claire M Doerschuk

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
0.8field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 22 citations in OpenAlex.

  1. Article
  2. Article
  3. Innate immune responses in pneumonia.Pneumonia (Nathan Qld.) · 2023
    Review
  4. TBK1's Role in Bacterial Pneumonia: Perhaps More than Macrophages and IFNs.American journal of respiratory cell and molecular biology · 2022
    Article
  5. Article
  6. Review
  7. Contribution of Puma to Inflammatory Resolution During Early Pneumococcal Pneumonia.Frontiers in cellular and infection microbiology · 2022
    Article
  8. Article
  9. Review
  10. Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Integrative Physiology of Pneumonia.Physiological reviews · 2018
    Review
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

John C GomezCenter for Airways Disease, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.
Hong DangCystic Fibrosis/Pulmonary Research and Treatment Center, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.
Matthew KankeDepartment of Genetics, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.
Robert S HaganCenter for Airways Disease, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.ORCID 0000-0002-1504-0086
Jason R MockCenter for Airways Disease, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.
Samir N P KeladaDepartment of Genetics, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.ORCID 0000-0003-2676-9232
Praveen SethupathyDepartment of Genetics, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.
Claire M DoerschukCenter for Airways Disease, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA. cmd@med.unc.edu.
University of North Carolina at Chapel Hill · US

Funding

Virology Research Program (Program 4)P30CA016086 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Deborah F. Tate · 1985 to 2026
$201.5M
UNC-CH CENTER FOR ENVIRONMENTAL HEALTH &SUSCEPTIBILITYP30ES010126 · NIEHS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Melissa A. Troester · 2001 to 2026
$36.3M
TRAINING IN RESPIRATORY AND ENVIRONMENTAL MEDICINET32HL007106 · NHLBI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI BOUCHER, RICHARD CHARLES, DOERSCHUK, CLAIRE M · 1985 to 2021
$7.3M
Neutrophil Sequestration and Emigration in the LungR37HL048160 · NHLBI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI DOERSCHUK, CLAIRE M · 2002 to 2011
$3.6M
Rho-mediated Signaling in Lung Endothelial Cells Induced by Neutrophil AdhesionR01HL114388 · NHLBI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI BURRIDGE, KEITH, DOERSCHUK, CLAIRE M · 2012 to 2016
$3.0M
CD-18 DEPENDENT/INDEPENDENT WBC RESPONSES IN THE LUNGR01HL052466 · NHLBI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI DOERSCHUK, CLAIRE M · 1994 to 2007
$2.7M
Regulatory T Cells Promote Alveolar Epithelial RepairK08HL129075 · NHLBI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI MOCK, JASON ROBERT · 2016 to 2019
$685k
NEUTROPHIL SEQUESTRATION AND EMIGRATION IN THE LUNGR01HL048160 · NHLBI · INDIANA UNIV-PURDUE UNIV AT INDIANAPOLIS · PI DOERSCHUK, CLAIRE M · 1992 to 2001
$581k
NCI NIH HHS P30 CA016086NHLBI NIH HHS K08 HL129075NHLBI NIH HHS R01 HL048160NHLBI NIH HHS R01 HL052466NHLBI NIH HHS R01 HL114388NHLBI NIH HHS R37 HL048160NHLBI NIH HHS T32 HL007106NIEHS NIH HHS P30 ES010126
6 · The paper itself

Abstract

The complex role of neutrophils in modulating the inflammatory response is increasingly appreciated. Our studies profiled the expression of mRNAs and microRNAs (miRs) in lung neutrophils in mice during S. pneumoniae pneumonia and performed in depth in silico analyses. Lung neutrophils were isolated 24 hours after intratracheal instillation of PBS or S. pneumoniae, and differentially expressed (DE) mRNAs and miRs were identified. Lung neutrophils from mice with S. pneumoniae pneumonia contained 4127 DE mRNAs, 36% of which were upregulated at least 2-fold. During pneumonia, lung neutrophils increase expression of pattern recognition receptors, receptors for inflammatory mediators, transcription factors including NF-κB and AP-1, Nrf2 targets, cytokines, chemokines and other inflammatory mediators. Interestingly, neutrophils responded to Type I interferons, whereas they both produced and responded to Type II interferon. Expression of regulators of the inflammatory and immune response was verified at the mRNA and protein level. Of approximately 1100 miRs queried, 31 increased and 67 decreased more than 2-fold in neutrophils from S. pneumoniae pneumonia. Network analyses of potential DE miR-target DE mRNA interactions revealed candidate key regulatory miRs. Thus, S. pneumoniae modulates mRNA and miR expression by lung neutrophils, increasing their ability to respond and facilitating host defense.

Indexed as

Gene Expression ProfilingAnimalsComputational BiologyDisease Models, AnimalGene Regulatory NetworksLungMiceMicroRNAsNeutrophilsPneumonia, PneumococcalRNA, MessengerMicroRNAsRNA, Messenger

Identifiers

PMID28900269
PMCPMC5595893
OpenAlexW2751132917

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.