Evidence map›Paper›PMID 28900255›Full record

ArticleScientific reports2017

Saturated mutagenesis of ketoisovalerate decarboxylase V461 enabled specific synthesis of 1-pentanol via the ketoacid elongation cycle.

Grey S Chen, Siang Wun Siao, Claire R Shen

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 42 citations in OpenAlex.

  1. Enhanced growth of 1-butanol producingBiodesign research · 2026
    Article
  2. Engineering New-to-Nature Biological Pathways for β,γ-Alkanediol Synthesis.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Article
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  6. Review
  7. Production of (R)-citramalate by engineeredMetabolic engineering communications · 2024
    Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Advances in biosynthesis of higher alcohols in Escherichia coli.World journal of microbiology & biotechnology · 2023
    Review
  13. Review
  14. Review
  15. Article
  16. Article
  17. Synthetic Biology and Metabolic Engineering EmployingFrontiers in bioengineering and biotechnology · 2020
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Grey S ChenDepartment of Chemical Engineering, National Tsing Hua University, Hsinchu, Taiwan.
Siang Wun SiaoDepartment of Chemical Engineering, National Tsing Hua University, Hsinchu, Taiwan.
Claire R ShenDepartment of Chemical Engineering, National Tsing Hua University, Hsinchu, Taiwan. crshen@mx.nthu.edu.tw.ORCID 0000-0001-6166-2524
National Tsing Hua University · TW

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Iterative ketoacid elongation has been an essential tool in engineering artificial metabolism, in particular the synthetic alcohols. However, precise control of product specificity is still greatly challenged by the substrate promiscuity of the ketoacid decarboxylase, which unselectively hijacks ketoacid intermediates from the elongation cycle along with the target ketoacid. In this work, preferential tuning of the Lactococcus lactis ketoisovalerate decarboxylase (Kivd) specificity toward 1-pentanol synthesis was achieved via saturated mutagenesis of the key residue V461 followed by screening of the resulting alcohol spectrum. Substitution of V461 with the small and polar amino acid glycine or serine significantly improved the Kivd selectivity toward the 1-pentanol precursor 2-ketocaproate by lowering its catalytic efficiency for the upstream ketoacid 2-ketobutyrate and 2-ketovalerate. Conversely, replacing V461 with bulky or charged side chains displayed severely adverse effect. Increasing supply of the iterative addition unit acetyl-CoA by acetate feeding further drove 2-ketoacid flux into the elongation cycle and enhanced 1-pentanol productivity. The Kivd V461G variant enabled a 1-pentanol production specificity around 90% of the total alcohol content with or without oleyl alcohol extraction. This work adds insight to the selectivity of Kivd active site.

Indexed as

CodonMutagenesisAcetatesAlcoholsCarboxy-LyasesGene ExpressionGenetic VariationKeto AcidsMetabolic Networks and PathwaysModels, MolecularPentanolsProtein ConformationAcetatesAlcoholsCarboxy-LyasesCodonKeto Acidsn-pentanolPentanols

Identifiers

PMID28900255
PMCPMC5595793
OpenAlexW2752071848

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.