Evidence map›Paper›PMID 28900157›Full record

ArticleScientific reports2017

Synergy of two low-affinity NLSs determines the high avidity of influenza A virus nucleoprotein NP for human importin α isoforms.

Wei Wu, Rajeshwer S Sankhala, Tyler J Florio, Lixin Zhou, Nhan L T Nguyen, Ravi K Lokareddy, Gino Cingolani, Nelly Panté

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
1.1field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 21 citations in OpenAlex.

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  13. Karyopherin-mediated nucleocytoplasmic transport.Nature reviews. Molecular cell biology · 2022
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Wei WuUniversity of British Columbia, Department of Zoology, Vancouver, British Columbia, V6T1Z4, Canada.
Rajeshwer S SankhalaThomas Jefferson University, Department of Biochemistry and Molecular Biology, Philadelphia, PA, 19107, USA.
Tyler J FlorioThomas Jefferson University, Department of Biochemistry and Molecular Biology, Philadelphia, PA, 19107, USA.
Lixin ZhouUniversity of British Columbia, Department of Zoology, Vancouver, British Columbia, V6T1Z4, Canada.
Nhan L T NguyenUniversity of British Columbia, Department of Zoology, Vancouver, British Columbia, V6T1Z4, Canada.
Ravi K LokareddyThomas Jefferson University, Department of Biochemistry and Molecular Biology, Philadelphia, PA, 19107, USA.
Gino CingolaniThomas Jefferson University, Department of Biochemistry and Molecular Biology, Philadelphia, PA, 19107, USA. gino.cingolani@jefferson.edu.
Nelly PantéUniversity of British Columbia, Department of Zoology, Vancouver, British Columbia, V6T1Z4, Canada. pante@zoology.ubc.ca.
Thomas Jefferson University · USUniversity of British Columbia · CA

Funding

X-Ray Crystallography and Macromolecular CharacterizationP30CA056036 · NCI · THOMAS JEFFERSON UNIVERSITY · PI DANIEL P SILVER · 1995 to 2026
$94.8M
Multisubunit viral ATPases that couple ATP-hydrolysis to genome translocationR01GM100888 · NIGMS · THOMAS JEFFERSON UNIVERSITY · PI CINGOLANI, GINO · 2012 to 2020
$2.5M
A NEW HYBRID DIFFRACTOMETER FOR MACROMOLECULAR CRYSTALLOGRAPHY AND SAXS AT TJUS10OD017987 · OD · THOMAS JEFFERSON UNIVERSITY · PI CINGOLANI, GINO · 2014 to 2014
$600k
NCI NIH HHS P30 CA056036NIGMS NIH HHS R01 GM100888NIH HHS S10 OD017987
6 · The paper itself

Abstract

The influenza A virus nucleoprotein (NP) is an essential multifunctional protein that encapsidates the viral genome and functions as an adapter between the virus and the host cell machinery. NPs from all strains of influenza A viruses contain two nuclear localization signals (NLSs): a well-studied monopartite NLS1 and a less-characterized NLS2, thought to be bipartite. Through site-directed mutagenesis and functional analysis, we found that NLS2 is also monopartite and is indispensable for viral infection. Atomic structures of importin α bound to two variants of NLS2 revealed NLS2 primarily binds the major-NLS binding site of importin α, unlike NLS1 that associates with the minor NLS-pocket. Though peptides corresponding to NLS1 and NLS2 bind weakly to importin α, the two NLSs synergize in the context of the full length NP to confer high avidity for importin α7, explaining why the virus efficiently replicates in the respiratory tract that exhibits high levels of this isoform. This study, the first to functionally characterize NLS2, demonstrates NLS2 plays an important and unexpected role in influenza A virus infection. We propose NLS1 and NLS2 form a bipartite NLS in trans, which ensures high avidity for importin α7 while preventing non-specific binding to viral RNA.

Indexed as

Nuclear Localization SignalsActive Transport, Cell Nucleusalpha KaryopherinsAmino Acid SequenceAnimalsCell LineHumansInfluenza A virusInfluenza, HumanModels, MolecularMolecular ConformationMutationNucleocapsid ProteinsProtein BindingRNA-Binding ProteinsViral Core Proteinsalpha KaryopherinsNP protein, Influenza A virusNuclear Localization SignalsNucleocapsid ProteinsRNA-Binding ProteinsViral Core Proteins

Identifiers

PMID28900157
PMCPMC5595889
OpenAlexW2752295055

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.