Evidence map›Paper›PMID 28900110›Full record

ArticleScientific reports2017

Enhancement of Environmental Hazard Degradation in the Presence of Lignin: a Proteomics Study.

Su Sun, Shangxian Xie, Yanbing Cheng, Hongbo Yu, Honglu Zhao, Muzi Li, Xiaotong Li, Xiaoyu Zhang, Joshua S Yuan, Susie Y Dai

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
3.0field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 27 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Article
  5. Genome-wide overview of3 Biotech · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 2 countries.

Su SunSchool of Life Science and Technology, Huazhong University of Science and Technology, Wuhan, China.
Shangxian XieSchool of Life Science and Technology, Huazhong University of Science and Technology, Wuhan, China.
Yanbing ChengSynthetic and Systems Biology Innovation Hub, Department of Plant Pathology and Microbiology, Texas A&M University, College Station, TX, USA.
Hongbo YuSchool of Life Science and Technology, Huazhong University of Science and Technology, Wuhan, China.
Honglu ZhaoSchool of Life Science and Technology, Huazhong University of Science and Technology, Wuhan, China.
Muzi LiSynthetic and Systems Biology Innovation Hub, Department of Plant Pathology and Microbiology, Texas A&M University, College Station, TX, USA.
Xiaotong LiSynthetic and Systems Biology Innovation Hub, Department of Plant Pathology and Microbiology, Texas A&M University, College Station, TX, USA.
Xiaoyu ZhangSchool of Life Science and Technology, Huazhong University of Science and Technology, Wuhan, China. zhangxiaoyu@mail.hust.edu.cn.
Joshua S YuanSynthetic and Systems Biology Innovation Hub, Department of Plant Pathology and Microbiology, Texas A&M University, College Station, TX, USA. syuan@tamu.edu.
Susie Y DaiDepartment of Veterinary Pathology, Texas A&M University, College station, TX, USA. susie@otsc.tamu.edu.
Texas A&M University · USHuazhong University of Science and Technology · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Proteomics studies of fungal systems have progressed dramatically based on the availability of more fungal genome sequences in recent years. Different proteomics strategies have been applied toward characterization of fungal proteome and revealed important gene functions and proteome dynamics. Presented here is the application of shot-gun proteomic technology to study the bio-remediation of environmental hazards by white-rot fungus. Lignin, a naturally abundant component of the plant biomass, is discovered to promote the degradation of Azo dye by white-rot fungus Irpex lacteus CD2 in the lignin/dye/fungus system. Shotgun proteomics technique was used to understand degradation mechanism at the protein level for the lignin/dye/fungus system. Our proteomics study can identify about two thousand proteins (one third of the predicted white-rot fungal proteome) in a single experiment, as one of the most powerful proteomics platforms to study the fungal system to date. The study shows a significant enrichment of oxidoreduction functional category under the dye/lignin combined treatment. An in vitro validation is performed and supports our hypothesis that the synergy of Fenton reaction and manganese peroxidase might play an important role in DR5B dye degradation. The results could guide the development of effective bioremediation strategies and efficient lignocellulosic biomass conversion.

Indexed as

Biodegradation, EnvironmentalHazardous SubstancesAzo CompoundsBiotransformationComputational BiologyFungiGene ExpressionLigninOxidation-ReductionProteomicsAzo CompoundsHazardous SubstancesLignin

Identifiers

PMID28900110
PMCPMC5595786
OpenAlexW2751530347

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.