Evidence map›Paper›PMID 28898293›Full record

ArticlePloS one2017

The Vibrio cholerae var regulon encodes a metallo-β-lactamase and an antibiotic efflux pump, which are regulated by VarR, a LysR-type transcription factor.

Hong-Ting Victor Lin, Teresa Massam-Wu, Chen-Ping Lin, Yen-Jen Anna Wang, Yu-Chi Shen, Wen-Jung Lu, Pang-Hung Hsu, Yu-Hou Chen, Maria Ines Borges-Walmsley, Adrian Robert Walmsley

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
0.7field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 43 citations in OpenAlex.

  1. Genomic and epidemiological insights into a non-toxigenic Vibrio cholerae O1 Ogawa from an autochthonous case in Brazil.European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology · 2026
    Article
  2. Article
  3. Article
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  5. Article
  6. Article
  7. LysR-type transcriptional regulatorFrontiers in cellular and infection microbiology · 2025
    Article
  8. Article
  9. Article
  10. Article
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  12. Virulence and resistance patterns ofFrontiers in microbiology · 2023
    Article
  13. Article
  14. Insights into Carbapenem Resistance inInternational journal of molecular sciences · 2022
    Review
  15. Article
  16. Heatwave-associatedEuro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin · 2021
    Article
  17. Article
  18. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

Hong-Ting Victor LinDepartment of Food Science, National Taiwan Ocean University, Keelung, Taiwan.
Teresa Massam-WuDepartment of Biosciences, Durham University, Durham, United Kingdom.
Chen-Ping LinDepartment of Food Science, National Taiwan Ocean University, Keelung, Taiwan.
Yen-Jen Anna WangDepartment of Food Science, National Taiwan Ocean University, Keelung, Taiwan.
Yu-Chi ShenDepartment of Food Science, National Taiwan Ocean University, Keelung, Taiwan.
Wen-Jung LuDepartment of Food Science, National Taiwan Ocean University, Keelung, Taiwan.
Pang-Hung HsuDepartment of Bioscience and Biotechnology, National Taiwan Ocean University, Keelung, Taiwan.
Yu-Hou ChenInstitute of Biological Chemistry, Academia Sinica, Taipei, Taiwan.
Maria Ines Borges-WalmsleyDepartment of Biosciences, Durham University, Durham, United Kingdom.
Adrian Robert WalmsleyDepartment of Biosciences, Durham University, Durham, United Kingdom.ORCID http://orcid.org/0000-0002-5136-0511
National Taiwan Ocean University · TWDurham University · GBInstitute of Biological Chemistry, Academia Sinica · TW

Funding

Wellcome Trust
6 · The paper itself

Abstract

The genome sequence of V. cholerae O1 Biovar Eltor strain N16961 has revealed a putative antibiotic resistance (var) regulon that is predicted to encode a transcriptional activator (VarR), which is divergently transcribed relative to the putative resistance genes for both a metallo-β-lactamase (VarG) and an antibiotic efflux-pump (VarABCDEF). We sought to test whether these genes could confer antibiotic resistance and are organised as a regulon under the control of VarR. VarG was overexpressed and purified and shown to have β-lactamase activity against penicillins, cephalosporins and carbapenems, having the highest activity against meropenem. The expression of VarABCDEF in the Escherichia coli (ΔacrAB) strain KAM3 conferred resistance to a range of drugs, but most significant resistance was to the macrolide spiramycin. A gel-shift analysis was used to determine if VarR bound to the promoter regions of the resistance genes. Consistent with the regulation of these resistance genes, VarR binds to three distinct intergenic regions, varRG, varGA and varBC located upstream and adjacent to varG, varA and varC, respectively. VarR can act as a repressor at the varRG promoter region; whilst this repression was relieved upon addition of β-lactams, these did not dissociate the VarR/varRG-DNA complex, indicating that the de-repression of varR by β-lactams is indirect. Considering that the genomic arrangement of VarR-VarG is strikingly similar to that of AmpR-AmpC system, it is possible that V. cholerae has evolved a system for resistance to the newer β-lactams that would prove more beneficial to the bacterium in light of current selective pressures.

Indexed as

Gene Expression Regulation, BacterialRegulonAnti-Bacterial AgentsATP-Binding Cassette TransportersBase Sequencebeta-LactamasesDNA, IntergenicDrug Resistance, BacterialGenes, BacterialHydrolysisKineticsMembrane Transport ProteinsMicrobial Sensitivity TestsPromoter Regions, GeneticProtein BindingTranscription FactorsAnti-Bacterial AgentsATP-Binding Cassette Transportersbeta-LactamasesDNA, IntergenicMembrane Transport ProteinsTranscription Factors

Identifiers

PMID28898293
PMCPMC5595328
OpenAlexW2756021788

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.