Evidence map›Paper›PMID 28895730›Full record

ArticleACS chemical biology2018

Rheostatic Control of Cas9-Mediated DNA Double Strand Break (DSB) Generation and Genome Editing.

John C Rose, Jason J Stephany, Cindy T Wei, Douglas M Fowler, Dustin J Maly

Abstract read
In one paragraph

Article in ACS chemical biology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.0field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 16 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Development of a DNA double-strand break-free base editing tool inMetabolic engineering communications · 2020
    Article
  6. Article
  7. Article
  8. Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

John C RoseDepartment of Chemistry, University of Washington , Seattle, Washington 98195, United States.
Jason J StephanyDepartment of Genome Sciences, University of Washington , Seattle, Washington 98195, United States.
Cindy T WeiDepartment of Chemistry, University of Washington , Seattle, Washington 98195, United States.
Douglas M FowlerDepartment of Genome Sciences, University of Washington , Seattle, Washington 98195, United States.
Dustin J MalyDepartment of Chemistry, University of Washington , Seattle, Washington 98195, United States.ORCID 0000-0003-0094-0177
University of Washington · US

Funding

University of Washington Medical Scientist Training Program: MD/PhDT32GM007266 · NIGMS · UNIVERSITY OF WASHINGTON · PI HORWITZ, MARSHALL S. · 1985 to 2023
$30.4M
New Molecular Probes For Protein KinasesR01GM086858 · NIGMS · UNIVERSITY OF WASHINGTON · PI MALY, DUSTIN J · 2008 to 2025
$5.5M
Large-Scale Methods for Assessing the Consequences of Mutations in ProteinsR01GM109110 · NIGMS · UNIVERSITY OF WASHINGTON · PI FOWLER, DOUGLAS M · 2014 to 2021
$2.4M
NIGMS NIH HHS R01 GM086858NIGMS NIH HHS R01 GM109110NIGMS NIH HHS T32 GM007266
6 · The paper itself

Abstract

We recently reported two novel tools for precisely controlling and quantifying Cas9 activity: a chemically inducible Cas9 variant (ciCas9) that can be rapidly activated by small molecules and a ddPCR assay for time-resolved measurement of DNA double strand breaks (DSB-ddPCR). Here, we further demonstrate the potential of ciCas9 to function as a tunable rheostat for Cas9 function. We show that a new highly potent and selective small molecule activator paired with a more tightly regulated ciCas9 variant expands the range of accessible Cas9 activity levels. We subsequently demonstrate that ciCas9 activity levels can be dose-dependently tuned with a small molecule activator, facilitating rheostatic time-course experiments. These studies provide the first insight into how Cas9-mediated DSB levels correlate with overall editing efficiency. Thus, we demonstrate that ciCas9 and our DSB-ddPCR assay permit the time-resolved study of Cas9 DSB generation and genome editing kinetics at a wide range of Cas9 activity levels.

Indexed as

DNA Breaks, Double-Strandedbcl-X ProteinBenzothiazolesCRISPR-Associated Protein 9CRISPR-Associated ProteinsCRISPR-Cas SystemsDNAGene EditingHEK293 CellsHumansINDEL MutationIsoquinolinesPolymerase Chain ReactionStreptococcus pyogenesA-1155463BCL2L1 protein, humanbcl-X ProteinBenzothiazolesCas9 endonuclease Streptococcus pyogenesCRISPR-Associated Protein 9CRISPR-Associated ProteinsDNAIsoquinolines

Identifiers

PMID28895730
PMCPMC5821106
OpenAlexW2754751713

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.