Evidence map›Paper›PMID 28894202›Full record

ArticleScientific reports2017

Principal contribution of HLA-DQ alleles, DQB1*06:04 and DQB1*03:01, to disease resistance against primary biliary cholangitis in a Japanese population.

Michio Yasunami, Hitomi Nakamura, Katsushi Tokunaga, Minae Kawashima, Nao Nishida, Yuki Hitomi, Minoru Nakamura

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
2.0field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 31 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Biomedicines · 2023
    Article
  5. Article
  6. Article
  7. Review
  8. NovelFrontiers in immunology · 2023
    Article
  9. Review
  10. Review
  11. HLA, gut microbiome and hepatic autoimmunity.Frontiers in immunology · 2022
    Review
  12. Article
  13. Article
  14. Primary biliary cholangitis: pathogenesis and therapeutic opportunities.Nature reviews. Gastroenterology & hepatology · 2020
    Review
  15. Article
  16. Article
  17. Article
  18. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 5 institutions in 1 country.

Michio YasunamiDepartment of Medical Genomics, Life Science Institute, Saga-Ken Medical Centre Koseikan, Saga, 840-8571, Japan. yasunami-michio@koseikan.jp.ORCID 0000-0002-6947-6168
Hitomi NakamuraDepartment of Clinical Medicine, Institute of Tropical Medicine, Nagasaki University, Nagasaki, 852-8523, Japan.
Katsushi TokunagaDepartment of Human Genetics, Graduate School of Medicine, the University of Tokyo, Tokyo, 113-0033, Japan.
Minae KawashimaDepartment of Human Genetics, Graduate School of Medicine, the University of Tokyo, Tokyo, 113-0033, Japan.
Nao NishidaDepartment of Human Genetics, Graduate School of Medicine, the University of Tokyo, Tokyo, 113-0033, Japan.
Yuki HitomiDepartment of Human Genetics, Graduate School of Medicine, the University of Tokyo, Tokyo, 113-0033, Japan.
Minoru NakamuraClinical Research Center, National Hospital Organization (NHO) Nagasaki Medical Center and Department of Hepatology, Nagasaki University Graduate School of Biomedical Sciences, Omura, 856-8562, Japan. nakamuram@nagasaki-mc.com.
The University of Tokyo · JPMinistry of Health Labour and Welfare · JPNagasaki Medical Center · JPNational Center for Global Health and Medicine · JPSaga-Ken Medical Centre Koseikan · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Identification of the primary allele(s) in HLA class II associated diseases remains challenging because of a tight linkage between alleles of HLA-DR and -DQ loci. In the present study, we determined the genotypes of seven HLA loci (HLA-A, -B, -DRB1, -DQA1, -DQB1, -DPA1 and -DPB1) for 1200 Japanese patients with primary biliary cholangitis and 1196 controls. Observation of recombination derivatives facilitated an evaluation of the effects of individual HLA alleles consisting of disease-prone/disease-resistant HLA haplotypes. Consequently, a primary contribution of DQB1*06:04 (odds ratio: 0.19, p = 1.91 × 10

Indexed as

AllelesDisease ResistanceGenetic Association StudiesGenetic Predisposition to DiseaseAgedCase-Control StudiesCholangitisComorbidityFemaleGene FrequencyGenotypeHaplotypesHLA-DQ beta-ChainsHumansJapanLinkage DisequilibriumHLA-DQ beta-Chains

Identifiers

PMID28894202
PMCPMC5593890
OpenAlexW2751797737

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.