Evidence map›Paper›PMID 28894100›Full record

ArticleScientific reports2017

Structural Basis for the Bidirectional Activity of Bacillus nanoRNase NrnA.

Brad J Schmier, Claudiu M Nelersa, Arun Malhotra

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
0.6field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 19 citations in OpenAlex.

  1. RNA exoribonucleases in E. coli.Archives of microbiology · 2026
    Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Nano-RNases: oligo- or dinucleases?FEMS microbiology reviews · 2022
    Review
  8. Article
  9. Structure and Function of Piezophilic HyperthermophilicInternational journal of molecular sciences · 2021
    Article
  10. Article
  11. Bacterial ribonucleases and their roles in RNA metabolism.Critical reviews in biochemistry and molecular biology · 2019
    Review
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Brad J SchmierDepartment of Biochemistry and Molecular Biology, University of Miami Miller School of Medicine, PO Box 016129, Miami, FL, 33101-6129, USA.
Claudiu M NelersaDepartment of Biochemistry and Molecular Biology, University of Miami Miller School of Medicine, PO Box 016129, Miami, FL, 33101-6129, USA.
Arun MalhotraDepartment of Biochemistry and Molecular Biology, University of Miami Miller School of Medicine, PO Box 016129, Miami, FL, 33101-6129, USA. amalhotra@miami.edu.ORCID 0000-0001-6656-7841
University of Miami · US

Funding

Structural studies of exoribonucleasesR01GM069972 · NIGMS · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI MALHOTRA, ARUN · 2003 to 2007
$1.4M
NIGMS NIH HHS R01 GM069972
6 · The paper itself

Abstract

NanoRNAs are RNA fragments 2 to 5 nucleotides in length that are generated as byproducts of RNA degradation and abortive transcription initiation. Cells have specialized enzymes to degrade nanoRNAs, such as the DHH phosphoesterase family member NanoRNase A (NrnA). This enzyme was originally identified as a 3' → 5' exonuclease, but we show here that NrnA is bidirectional, degrading 2-5 nucleotide long RNA oligomers from the 3' end, and longer RNA substrates from the 5' end. The crystal structure of Bacillus subtilis NrnA reveals a dynamic bi-lobal architecture, with the catalytic N-terminal DHH domain linked to the substrate binding C-terminal DHHA1 domain via an extended linker. Whereas this arrangement is similar to the structure of RecJ, a 5' → 3' DHH family DNase and other DHH family nanoRNases, Bacillus NrnA has gained an extended substrate-binding patch that we posit is responsible for its 3' → 5' activity.

Indexed as

Amino Acid SequenceBacillusBacterial ProteinsBinding SitesCatalytic DomainEnzyme ActivationModels, MolecularProtein ConformationProtein Interaction Domains and MotifsRibonucleasesRNARNA StabilityStructure-Activity RelationshipBacterial ProteinsRibonucleasesRNA

Identifiers

PMID28894100
PMCPMC5593865
OpenAlexW2752079026

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.