Evidence map›Paper›PMID 28893852›Full record

ArticleThe Plant cell2017

Changes in Gene Expression in Space and Time Orchestrate Environmentally Mediated Shaping of Root Architecture.

Liam Walker, Clare Boddington, Dafyd Jenkins, Ying Wang, Jesper T Grønlund, Jo Hulsmans, Sanjeev Kumar, Dhaval Patel, Jonathan D Moore, Anthony Carter and 6 more

Open access · hybridAbstract read
In one paragraph

Article in The Plant cell, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed, 1 pooled it
11.2field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 1 synthesis or guideline pooled it, 60 citations in OpenAlex.

  1. Pooled it
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  12. Article
  13. Spatiotemporal analysis identifies ABF2 and ABF3 as key hubs of endodermal response to nitrate.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  14. Dynamic Nutrient Signaling Networks in Plants.Annual review of cell and developmental biology · 2021
    Review
  15. Article
  16. What is quantitative plant biology?Quantitative plant biology · 2021
    Review
  17. Article
  18. Article
  19. Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 2 institutions in 2 countries.

Liam WalkerSchool of Life Sciences, University of Warwick, Coventry CV4 7AL, United Kingdom.ORCID http://orcid.org/0000-0003-0261-0518
Clare BoddingtonWarwick Systems Biology Centre, University of Warwick, Senate House, Coventry CV4 7AL, United Kingdom.
Dafyd JenkinsSchool of Life Sciences, University of Warwick, Coventry CV4 7AL, United Kingdom.
Ying WangWarwick Systems Biology Centre, University of Warwick, Senate House, Coventry CV4 7AL, United Kingdom.
Jesper T GrønlundSchool of Life Sciences, University of Warwick, Coventry CV4 7AL, United Kingdom.
Jo HulsmansSchool of Life Sciences, University of Warwick, Coventry CV4 7AL, United Kingdom.ORCID http://orcid.org/0000-0003-0875-1936
Sanjeev KumarSchool of Life Sciences, University of Warwick, Coventry CV4 7AL, United Kingdom.ORCID http://orcid.org/0000-0002-3561-8180
Dhaval PatelSchool of Life Sciences, University of Warwick, Coventry CV4 7AL, United Kingdom.ORCID http://orcid.org/0000-0002-2099-0596
Jonathan D MooreWarwick Systems Biology Centre, University of Warwick, Senate House, Coventry CV4 7AL, United Kingdom.ORCID http://orcid.org/0000-0002-5486-0407
Anthony CarterSchool of Life Sciences, University of Warwick, Coventry CV4 7AL, United Kingdom.
Siva SamavedamSchool of Life Sciences, University of Warwick, Coventry CV4 7AL, United Kingdom.
Giovanni BonomoCenter for Genomics and Systems Biology, Department of Biology, New York University, New York, New York 10003.
David S HershCenter for Genomics and Systems Biology, Department of Biology, New York University, New York, New York 10003.
Gloria M CoruzziCenter for Genomics and Systems Biology, Department of Biology, New York University, New York, New York 10003.ORCID http://orcid.org/0000-0003-2608-2166
Nigel J BurroughsWarwick Systems Biology Centre, University of Warwick, Senate House, Coventry CV4 7AL, United Kingdom.
Miriam L GiffordSchool of Life Sciences, University of Warwick, Coventry CV4 7AL, United Kingdom miriam.gifford@warwick.ac.uk.ORCID http://orcid.org/0000-0002-4005-2513
University of Warwick · GBNew York University · US

Funding

Biotechnology and Biological Sciences Research Council BB/H019502/1Biotechnology and Biological Sciences Research Council BB/M017982/1
6 · The paper itself

Abstract

Shaping of root architecture is a quintessential developmental response that involves the concerted action of many different cell types, is highly dynamic, and underpins root plasticity. To determine to what extent the environmental regulation of lateral root development is a product of cell-type preferential activities, we tracked transcriptomic responses to two different treatments that both change root development in

Indexed as

ArabidopsisArabidopsis ProteinsGene Expression Regulation, PlantPlant RootsArabidopsis Proteins

Identifiers

PMID28893852
PMCPMC5774560
OpenAlexW2750396941

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.