Evidence map›Paper›PMID 28892495›Full record

ArticlePLoS genetics2017

Chlamydomonas DYX1C1/PF23 is essential for axonemal assembly and proper morphology of inner dynein arms.

Ryosuke Yamamoto, Jagan M Obbineni, Lea M Alford, Takahiro Ide, Mikito Owa, Juyeon Hwang, Takahide Kon, Kazuo Inaba, Noliyanda James, Stephen M King and 3 more

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
1.5field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 40 citations in OpenAlex.

  1. Article
  2. Proceedings of the National Academy of Sciences of the United States of America · 2025
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  9. A novel homozygous splice variant inActa biochimica et biophysica Sinica · 2023
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  16. PCD Genes-From Patients to Model Organisms and Back to Humans.International journal of molecular sciences · 2022
    Review
  17. Strongly TruncatedFrontiers in genetics · 2022
    Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

13 authors at 7 institutions in 3 countries.

Ryosuke YamamotoDepartment of Biological Sciences, Graduate School of Science, Osaka University, Osaka, Japan.
Jagan M ObbineniLaboratory of Biomolecular Research, Paul Scherrer Institute, Villigen PSI, Switzerland.ORCID http://orcid.org/0000-0001-7716-2778
Lea M AlfordDepartment of Biology, Oglethorpe University, Atlanta, Georgia, United States of America.
Takahiro IdeDepartment of Biological Sciences, Graduate School of Science, University of Tokyo, Tokyo, Japan.
Mikito OwaDepartment of Biological Sciences, Graduate School of Science, University of Tokyo, Tokyo, Japan.
Juyeon HwangDepartment of Cell Biology, Emory University School of Medicine, Atlanta, Georgia, United States of America.
Takahide KonDepartment of Biological Sciences, Graduate School of Science, Osaka University, Osaka, Japan.ORCID http://orcid.org/0000-0002-1231-7609
Kazuo InabaShimoda Marine Research Center, University of Tsukuba, Shizuoka, Japan.
Noliyanda JamesDepartment of Genetics, Washington University School of Medicine, St. Louis, Missouri, United States of America.
Stephen M KingDepartment of Molecular Biology and Biophysics, University of Connecticut Health Center, Farmington, Connecticut, United States of America.ORCID http://orcid.org/0000-0002-5484-5530
Takashi IshikawaLaboratory of Biomolecular Research, Paul Scherrer Institute, Villigen PSI, Switzerland.
Winfield S SaleDepartment of Cell Biology, Emory University School of Medicine, Atlanta, Georgia, United States of America.ORCID http://orcid.org/0000-0003-4966-2120
Susan K DutcherShimoda Marine Research Center, University of Tsukuba, Shizuoka, Japan.ORCID http://orcid.org/0000-0001-5689-5753
Emory University · USPaul Scherrer Institute · CHThe University of Osaka · JPUniversity of Tsukuba · JPOglethorpe University · USUConn Health · USWashington University in St. Louis · US

Funding

REGULATION OF MOTILE CILIA ASSEMBLY IN LUNG DISEASER01HL128370 · NHLBI · WASHINGTON UNIVERSITY · PI Steven Brody, SUSAN K DUTCHER · 2015 to 2026
$6.9M
MOLECULAR ANALYSIS OF FLAGELLAR DYNEIN FUNCTIONR01GM051293 · NIGMS · UNIVERSITY OF CONNECTICUT SCH OF MED/DNT · PI KING, STEPHEN M · 1995 to 2020
$6.9M
Functional Substructure of Flagellar DyneinR37GM051173 · NIGMS · EMORY UNIVERSITY · PI SALE, WINFIELD S · 2002 to 2011
$4.0M
FUNCTIONAL SUBSTRUCTURE OF FLAGELLAR DYNEINR01GM051173 · NIGMS · EMORY UNIVERSITY · PI SALE, WINFIELD S · 1994 to 2020
$3.6M
MARC U-STAR PROGRAM AT WASHINGTON UNIVERSITY IN ST. LOUIST34GM083914 · NIGMS · WASHINGTON UNIVERSITY · PI SKEATH, JAMES BENJAMIN · 2009 to 2020
$2.3M
NHLBI NIH HHS R01 HL128370NIGMS NIH HHS R01 GM051173NIGMS NIH HHS R01 GM051293NIGMS NIH HHS R37 GM051173NIGMS NIH HHS T34 GM083914
6 · The paper itself

Abstract

Cytoplasmic assembly of ciliary dyneins, a process known as preassembly, requires numerous non-dynein proteins, but the identities and functions of these proteins are not fully elucidated. Here, we show that the classical Chlamydomonas motility mutant pf23 is defective in the Chlamydomonas homolog of DYX1C1. The pf23 mutant has a 494 bp deletion in the DYX1C1 gene and expresses a shorter DYX1C1 protein in the cytoplasm. Structural analyses, using cryo-ET, reveal that pf23 axonemes lack most of the inner dynein arms. Spectral counting confirms that DYX1C1 is essential for the assembly of the majority of ciliary inner dynein arms (IDA) as well as a fraction of the outer dynein arms (ODA). A C-terminal truncation of DYX1C1 shows a reduction in a subset of these ciliary IDAs. Sucrose gradients of cytoplasmic extracts show that preassembled ciliary dyneins are reduced compared to wild-type, which suggests an important role in dynein complex stability. The role of PF23/DYX1C1 remains unknown, but we suggest that DYX1C1 could provide a scaffold for macromolecular assembly.

Indexed as

Algal ProteinsAnimalsAxonemeChlamydomonas reinhardtiiCiliaCytoplasmCytoskeletal ProteinsDyneinsFlagellaHumansMutationNerve Tissue ProteinsNuclear ProteinsProtein DomainsAlgal ProteinsCytoskeletal ProteinsDNAAF4 protein, humanDyneinsNerve Tissue ProteinsNuclear Proteins

Identifiers

PMID28892495
PMCPMC5608425
OpenAlexW2754819309

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.