Evidence map›Paper›PMID 28892091›Full record

ArticleNature chemical biology2017

Oxidative cyclization of prodigiosin by an alkylglycerol monooxygenase-like enzyme.

Tristan de Rond, Parker Stow, Ian Eigl, Rebecca E Johnson, Leanne Jade G Chan, Garima Goyal, Edward E K Baidoo, Nathan J Hillson, Christopher J Petzold, Richmond Sarpong and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in Nature chemical biology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
3.0field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 30 citations in OpenAlex.

  1. Article
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  6. Late-stage diversification of bacterial natural products through biocatalysis.Frontiers in bioengineering and biotechnology · 2024
    Review
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  8. Review
  9. Article
  10. Article
  11. Article
  12. Review
  13. Review
  14. Frontiers in microbiology · 2020
    Article
  15. Review
  16. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 2 countries.

Tristan de RondDepartment of Chemistry, University of California, Berkeley, California, USA.ORCID http://orcid.org/0000-0002-5203-4662
Parker StowDepartment of Chemistry, University of California, Berkeley, California, USA.
Ian EiglDepartment of Chemical and Biomolecular Engineering, University of California, Berkeley, California, USA.
Rebecca E JohnsonDepartment of Chemistry, University of California, Berkeley, California, USA.
Leanne Jade G ChanDOE Joint BioEnergy Institute, Emeryville, California, USA.
Garima GoyalDOE Joint BioEnergy Institute, Emeryville, California, USA.
Edward E K BaidooDOE Joint BioEnergy Institute, Emeryville, California, USA.
Nathan J HillsonDOE Joint BioEnergy Institute, Emeryville, California, USA.
Christopher J PetzoldDOE Joint BioEnergy Institute, Emeryville, California, USA.ORCID http://orcid.org/0000-0002-8270-5228
Richmond SarpongDepartment of Chemistry, University of California, Berkeley, California, USA.ORCID http://orcid.org/0000-0002-0028-6323
Jay D KeaslingDepartment of Chemical and Biomolecular Engineering, University of California, Berkeley, California, USA.
Lawrence Berkeley National Laboratory · USUniversity of California, Berkeley · USQB3 · US

Funding

Total Synthesis of Bioactive Natural ProductsR01GM086374 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI SARPONG, RICHMOND · 2009 to 2018
$2.7M
NIGMS NIH HHS R01 GM086374
6 · The paper itself

Abstract

Prodiginines, which are tripyrrole alkaloids displaying a wide array of bioactivities, occur as linear and cyclic congeners. Identification of an unclustered biosynthetic gene led to the discovery of the enzyme responsible for catalyzing the regiospecific C-H activation and cyclization of prodigiosin to cycloprodigiosin in Pseudoalteromonas rubra. This enzyme is related to alkylglycerol monooxygenase and unrelated to RedG, the Rieske oxygenase that produces cyclized prodiginines in Streptomyces, implying convergent evolution.

Indexed as

CatalysisCyclizationEvolution, MolecularIndolesMixed Function OxygenasesOxidation-ReductionProdigiosinPseudoalteromonasPyrrolesStreptomycescycloprodigiosinglyceryl-ether monooxygenaseIndolesMixed Function OxygenasesprodiginineProdigiosinPyrroles

Identifiers

PMID28892091
PMCPMC5677514
OpenAlexW2754819135

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.