Evidence map›Paper›PMID 28892034›Full record

ArticleJournal of visualized experiments : JoVE2017

Shifting Zebrafish Lethal Skeletal Mutant Penetrance by Progeny Testing.

Elliott P Brooks, James T Nichols

Open access · greenAbstract readVideo-Audio Media
In one paragraph

Article in Journal of visualized experiments : JoVE, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.2field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
  2. Early ultraviolet exposure disrupts late dorsal fin skeletal development in zebrafish.Developmental dynamics : an official publication of the American Association of Anatomists · 2026
    Article
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  7. Distinct and redundant roles for zebrafishFrontiers in endocrinology · 2022
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Elliott P BrooksDepartment of Craniofacial Biology, University of Colorado Anschutz Medical Campus.
James T NicholsDepartment of Craniofacial Biology, University of Colorado Anschutz Medical Campus; james.nichols@ucdenver.edu.
University of Colorado Anschutz Medical Campus · US

Funding

Cell Fate Choices in the SkeletonR00DE024190 · NIDCR · UNIVERSITY OF COLORADO DENVER · PI NICHOLS, JAMES TUCKER · 2017 to 2019
$887k
Cell Fate Choices in the SkeletonK99DE024190 · NIDCR · UNIVERSITY OF OREGON · PI NICHOLS, JAMES TUCKER · 2014 to 2015
$296k
NIDCR NIH HHS K99 DE024190NIDCR NIH HHS R00 DE024190
6 · The paper itself

Abstract

Zebrafish mutant phenotypes are often incompletely penetrant, only manifesting in some mutants. Interesting phenotypes that inconsistently appear can be difficult to study, and can lead to confounding results. The protocol described here is a straightforward breeding paradigm to increase and decrease penetrance in lethal zebrafish skeletal mutants. Because lethal mutants cannot be selectively bred directly, the classic selective breeding strategy of progeny testing is employed. This method also includes protocols for Kompetitive Allele Specific PCR (KASP) genotyping zebrafish and staining larval zebrafish cartilage and bone. Applying the husbandry strategy described here can increase the penetrance of an interesting skeletal phenotype enabling more reproducible results in downstream applications. In addition, decreasing the mutant penetrance through this selective breeding strategy can reveal the developmental processes that most crucially require the function of the mutated gene. While the skeleton is specifically considered here, we propose that this methodology will be useful for all zebrafish mutant lines.

Indexed as

PenetranceAnimalsMutationZebrafishZebrafish ProteinsZebrafish Proteins

Identifiers

PMID28892034
PMCPMC5614404
OpenAlexW2751598286

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.