ArticleMolecules (Basel, Switzerland)2017
Complete Chloroplast Genome of Pinus massoniana (Pinaceae): Gene Rearrangements, Loss of ndh Genes, and Short Inverted Repeats Contraction, Expansion.
Article in Molecules (Basel, Switzerland), 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.
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19 citing papers in PubMed, 50 citations in OpenAlex.
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- A phylogenomic study of Iridaceae Juss. based on complete plastid genome sequences.Frontiers in plant science · 2023Article
- Assembly and Annotation of Red Spruce (International journal of molecular sciences · 2022Article
- Complete Chloroplast Genome ofGenes · 2022Article
- Comparative and phylogenetic analyses of six Kenya Polystachya (Orchidaceae) species based on the complete chloroplast genome sequences.BMC plant biology · 2022Article
- On the Edge of Dispensability, the ChloroplastInternational journal of molecular sciences · 2021Review
- Comparative plastid genomics of Mazaceae: focusing on a new recognized genus, Puchiumazus.Planta · 2021Article
- Highly degenerate plastomes in two hemiparasitic dwarf mistletoes: Arceuthobium chinense and A. pini (Viscaceae).Planta · 2021Article
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- Long-reads reveal thatPeerJ · 2020Article
- Transcriptional Analysis of Masson Pine (Genes · 2019Article
- De Novo Assembly Discovered Novel Structures in Genome of Plastids and Revealed Divergent Inverted Repeats inPlants (Basel, Switzerland) · 2019Article
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- Assembly of chloroplast genomes with long- and short-read data: a comparison of approaches using Eucalyptus pauciflora as a test case.BMC genomics · 2018Article
- The Complete Amomum kravanh Chloroplast Genome Sequence and Phylogenetic Analysis of the Commelinids.Molecules (Basel, Switzerland) · 2017Article
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5 authors at 2 institutions in 1 country.
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No grant is acknowledged in the PubMed record.
Abstract
The chloroplast genome (CPG) of Pinus massoniana belonging to the genus Pinus (Pinaceae), which is a primary source of turpentine, was sequenced and analyzed in terms of gene rearrangements, ndh genes loss, and the contraction and expansion of short inverted repeats (IRs). P. massoniana CPG has a typical quadripartite structure that includes large single copy (LSC) (65,563 bp), small single copy (SSC) (53,230 bp) and two IRs (IRa and IRb, 485 bp). The 108 unique genes were identified, including 73 protein-coding genes, 31 tRNAs, and 4 rRNAs. Most of the 81 simple sequence repeats (SSRs) identified in CPG were mononucleotides motifs of A/T types and located in non-coding regions. Comparisons with related species revealed an inversion (21,556 bp) in the LSC region; P. massoniana CPG lacks all 11 intact ndh genes (four ndh genes lost completely; the five remained truncated as pseudogenes; and the other two ndh genes remain as pseudogenes because of short insertions or deletions). A pair of short IRs was found instead of large IRs, and size variations among pine species were observed, which resulted from short insertions or deletions and non-synchronized variations between "IRa" and "IRb". The results of phylogenetic analyses based on whole CPG sequences of 16 conifers indicated that the whole CPG sequences could be used as a powerful tool in phylogenetic analyses.
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