Evidence map›Paper›PMID 28891071›Full record

ArticleInternational journal of cancer2018

Genetic variation in the vitamin D related pathway and breast cancer risk in women of African ancestry in the root consortium.

Shengfeng Wang, Dezheng Huo, Sonia Kupfer, Dereck Alleyne, Temidayo O Ogundiran, Oladosu Ojengbede, Wei Zheng, Katherine L Nathanson, Barbara Nemesure, Stefan Ambs and 2 more

Open access · greenAbstract read
In one paragraph

Article in International journal of cancer, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers, 5 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed, 5 pooled it
0.9field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 5 syntheses or guidelines pooled it, 14 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Pooled it
  4. Pooled it
  5. Pooled it
  6. Article
  7. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 7 institutions in 2 countries.

Shengfeng WangCenter for Clinical Cancer Genetics & Global Health, Department of Medicine, University of Chicago, Chicago, IL.
Dezheng HuoDepartment of Public Health Sciences, University of Chicago, Chicago, IL.
Sonia KupferDepartment of Medicine, University of Chicago, Chicago, Illinois.
Dereck AlleyneDepartment of Medicine, University of Chicago, Chicago, Illinois.
Temidayo O OgundiranDepartment of Surgery, College of Medicine, University of Ibadan, Ibadan, Nigeria.
Oladosu OjengbedeCenter for Population and Reproductive Health, College of Medicine, University of Ibadan, Ibadan, Nigeria.
Wei ZhengDivision of Epidemiology, Department of Medicine, Vanderbilt Epidemiology Center, Vanderbilt-Ingram Cancer Center, Vanderbilt University, Nashville, TN.ORCID 0000-0003-1226-070X
Katherine L NathansonDepartment of Medicine, University of Pennsylvania, Philadelphia, PA.
Barbara NemesureDepartment of Preventive Medicine, State University of New York at Stony Brook, Stony Brook, NY.
Stefan AmbsLaboratory of Human Carcinogenesis, National Cancer Institute, Bethesda, MD.
Olufunmilayo I OlopadeCenter for Clinical Cancer Genetics & Global Health, Department of Medicine, University of Chicago, Chicago, IL.
Yonglan ZhengCenter for Clinical Cancer Genetics & Global Health, Department of Medicine, University of Chicago, Chicago, IL.ORCID 0000-0001-6597-7072
University of Chicago · USUniversity of Ibadan · NGChicago Department of Public Health · USNational Cancer Institute · USState University of New York · USUniversity of Pennsylvania · USVanderbilt University · US

Funding

Novel Markers for Disease Outcome in Breast CancerZIABC010887 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI AMBS, STEFAN · 2009 to 2025
$11.5M
Using Genomics to Reduce Breast Cancer Disparities in the African DiasporaU01CA161032 · NCI · UNIVERSITY OF CHICAGO · PI HUO, DEZHENG, OLOPADE, OLUFUNMILAYO F. · 2012 to 2015
$3.6M
Genetics of Breast Cancer in BlacksR01CA089085 · NCI · UNIVERSITY OF CHICAGO · PI OLOPADE, OLUFUNMILAYO F. · 2002 to 2006
$2.8M
Genome-wide association study of breast cancer in the African DiasporaR01CA142996 · NCI · UNIVERSITY OF CHICAGO · PI OLOPADE, OLUFUNMILAYO F. · 2010 to 2012
$1.5M
Conference and Workshop on New Frontiers in diagnosis, screening and management of inherited cancer syndromesR13CA206594 · NCI · UNIVERSITY OF CHICAGO · PI OLOPADE, OLUFUNMILAYO F. · 2016 to 2017
$20k
NCI NIH HHS R01 CA089085NCI NIH HHS R01 CA142996NCI NIH HHS R13 CA206594NCI NIH HHS U01 CA161032
6 · The paper itself

Abstract

The vitamin D related pathway has been evaluated in carcinogenesis but its genetic contribution remains poorly understood. We examined single-nucleotide polymorphisms (SNPs) in the vitamin D related pathway genes using data from a genome-wide association study (GWAS) of breast cancer in the African Diaspora that included 3,686 participants (1,657 cases). Pathway- and gene-level analyses were conducted using the adaptive rank truncated product test. Odds ratios (OR) and 95% confidence intervals (CI) were estimated at SNP-level. After stringent Bonferroni corrections, we observed no significant association between variants in the vitamin D pathway and breast cancer risk at the pathway-, gene-, or SNP-level. In addition, no association was found for either the reported signals from GWASs of vitamin D related traits, or the SNPs within vitamin D receptor (VDR) binding regions. Furthermore, a decrease in genetically predicted 25(OH)D levels by Mendelian randomization was not associated with breast cancer (p = 0.23). However, an association for breast cancer with the pigment synthesis/metabolism pathway almost approached significance (pathway-level p = 0.08), driven primarily by a nonsense SNP rs41302073 in TYRP1, with an OR of 1.54 (95% CI = 1.24-1.91, p

Indexed as

AdultBlack PeopleBreast NeoplasmsFemaleGenetic Predisposition to DiseaseGenome-Wide Association StudyGenotypeHumansMiddle AgedPolymorphism, Single NucleotideVitamin DVitamin Dbreast cancerMendelian randomizationpathwaysingle-nucleotide polymorphismsvitamin Dwomen of African ancestry

Identifiers

PMID28891071
PMCPMC5755399
OpenAlexW2750589449

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.