Evidence map›Paper›PMID 28887379›Full record

ArticleMolecular & cellular proteomics : MCP2017

A Comprehensive, Open-source Platform for Mass Spectrometry-based Glycoproteomics Data Analysis.

Gang Liu, Kai Cheng, Chi Y Lo, Jun Li, Jun Qu, Sriram Neelamegham

Open access · hybridAbstract read
In one paragraph

Article in Molecular & cellular proteomics : MCP, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed, 1 pooled it
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 1 synthesis or guideline pooled it, 61 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Review
  6. In silico simulation of glycosylation and related pathways.Analytical and bioanalytical chemistry · 2024
    Review
  7. Review
  8. Article
  9. Review
  10. Article
  11. Article
  12. The Hitchhiker's guide to glycoproteomics.Biochemical Society transactions · 2021
    Review
  13. Article
  14. Review
  15. Review
  16. Article
  17. The Role of Data-Independent Acquisition for Glycoproteomics.Molecular & cellular proteomics : MCP · 2021
    Review
  18. Bioinformatics in Immunoglobulin Glycosylation Analysis.Experientia supplementum (2012) · 2021
    Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Gang LiuFrom the ‡Chemical and Biological Engineering.
Kai ChengFrom the ‡Chemical and Biological Engineering.
Chi Y LoFrom the ‡Chemical and Biological Engineering.
Jun Li¶Pharmaceutical Sciences; and.
Jun Qu¶Pharmaceutical Sciences; and.
Sriram NeelameghamFrom the ‡Chemical and Biological Engineering; neel@buffalo.edu.
Translational Research Institute · AU

Funding

University of Buffalo Clinical and Translational Science Institute - Supplement SchulyerUL1TR001412 · NCATS · STATE UNIVERSITY OF NEW YORK AT BUFFALO · PI MURPHY, TIMOTHY F · 2015 to 2024
$33.8M
REGULATION OF LACTOSAMINYL GLYCAN BIOSYNTHESIS IN HEMATOPOIETIC CELLSP01HL107146 · NHLBI · BRIGHAM AND WOMEN'S HOSPITAL · PI SACKSTEIN, ROBERT · 2011 to 2017
$17.7M
Systems Biology of GlycosylationR01HL103411 · NHLBI · STATE UNIVERSITY OF NEW YORK AT BUFFALO · PI NEELAMEGHAM, SRIRAM · 2011 to 2025
$7.1M
VON WILLEBRAND FACTOR STRUCTURE-FUNCTION UNDE FLUID FLOWR01HL077258 · NHLBI · STATE UNIVERSITY OF NEW YORK AT BUFFALO · PI NEELAMEGHAM, SRIRAM · 2006 to 2015
$3.0M
Anesthesiology Research Training ProgramT32GM099607 · NIGMS · STATE UNIVERSITY OF NEW YORK AT BUFFALO · PI KNIGHT III, PAUL R · 2012 to 2021
$1.8M
NCATS NIH HHS UL1 TR001412NHLBI NIH HHS P01 HL107146NHLBI NIH HHS R01 HL077258NHLBI NIH HHS R01 HL103411NIGMS NIH HHS T32 GM099607
6 · The paper itself

Abstract

Glycosylation is among the most abundant and diverse protein post-translational modifications (PTMs) identified to date. The structural analysis of this PTM is challenging because of the diverse monosaccharides which are not conserved among organisms, the branched nature of glycans, their isomeric structures, and heterogeneity in the glycan distribution at a given site. Glycoproteomics experiments have adopted the traditional high-throughput LC-MS

Indexed as

Cell Line, TumorGlycoproteinsGlycosylationHumansMaleProstatic NeoplasmsProtein Processing, Post-TranslationalProteomicsSoftwareTandem Mass SpectrometryGlycoproteins

Identifiers

PMID28887379
PMCPMC5672007
OpenAlexW2750804254

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.