ArticleBiology direct2017
Evidence-based gene models for structural and functional annotations of the oil palm genome.
Article in Biology direct, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.
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14 citing papers in PubMed, 42 citations in OpenAlex.
- Chromosome-scale Elaeis guineensis and E. oleifera assemblies: comparative genomics of oil palm and other Arecaceae.G3 (Bethesda, Md.) · 2024Article
- Unveiling the Secrets of Oil Palm Genetics: A Look into Omics Research.International journal of molecular sciences · 2024Review
- Multi-Omics Approaches in Oil Palm Research: A Comprehensive Review of Metabolomics, Proteomics, and Transcriptomics Based on Low-Temperature Stress.International journal of molecular sciences · 2024Review
- High-resolution genetic linkage map and height-related QTLs in an oil palm (Physiology and molecular biology of plants : an international journal of functional plant biology · 2023Article
- Genome-Wide Prediction of Transcription Start Sites in Conifers.International journal of molecular sciences · 2022Article
- Prediction of Rice Transcription Start Sites Using TransPrise: A Novel Machine Learning Approach.Methods in molecular biology (Clifton, N.J.) · 2021Article
- Expression of fatty acid and triacylglycerol synthesis genes in interspecific hybrids of oil palm.Scientific reports · 2020Article
- DNA methylation changes in clonally propagated oil palm.Plant cell reports · 2020Article
- CRISPR/Cas mediated base editing: a practical approach for genome editing in oil palm.3 Biotech · 2020Review
- MIGREW: database on molecular identification of genes for resistance in wheat.BMC bioinformatics · 2019Article
- Article
- PalmXplore: oil palm gene database.Database : the journal of biological databases and curation · 2018Article
- Comparative genomic and transcriptomic analysis of selected fatty acid biosynthesis genes and CNL disease resistance genes in oil palm.PloS one · 2018Article
- Identification ofG3 (Bethesda, Md.) · 2017Article
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Authors and funding
15 authors at 4 institutions in 3 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundOil palm is an important source of edible oil. The importance of the crop, as well as its long breeding cycle (10-12 years) has led to the sequencing of its genome in 2013 to pave the way for genomics-guided breeding. Nevertheless, the first set of gene predictions, although useful, had many fragmented genes. Classification and characterization of genes associated with traits of interest, such as those for fatty acid biosynthesis and disease resistance, were also limited. Lipid-, especially fatty acid (FA)-related genes are of particular interest for the oil palm as they specify oil yields and quality. This paper presents the characterization of the oil palm genome using different gene prediction methods and comparative genomics analysis, identification of FA biosynthesis and disease resistance genes, and the development of an annotation database and bioinformatics tools.
resultsUsing two independent gene-prediction pipelines, Fgenesh++ and Seqping, 26,059 oil palm genes with transcriptome and RefSeq support were identified from the oil palm genome. These coding regions of the genome have a characteristic broad distribution of GC
conclusionsWe present an accurate and comprehensive annotation of the oil palm genome, focusing on analysis of important categories of genes (GC REVIEWERS: This article was reviewed by Alexander Kel, Igor Rogozin, and Vladimir A. Kuznetsov.
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