Evidence map›Paper›PMID 28886711›Full record

ArticleRespiratory research2017

Structure and functional impact of seed region variant in MIR-499 gene family in bronchial asthma.

Eman A Toraih, Mohammad H Hussein, Essam Al Ageeli, Eman Riad, Nouran B AbdAllah, Ghada M Helal, Manal S Fawzy

Open access · goldAbstract read
In one paragraph

Article in Respiratory research, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed, 1 pooled it
0.5field-weighted citation impact, top 38% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 1 synthesis or guideline pooled it, 22 citations in OpenAlex.

  1. Pooled it
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  4. Review
  5. Article
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  7. Article
  8. Review
  9. MicroRNAs: Harbingers and shapers of periodontal inflammation.Seminars in cell & developmental biology · 2022
    Review
  10. Consequences of genetic variants in miRNA genes.Computational and structural biotechnology journal · 2022
    Review
  11. Article
  12. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 2 countries.

Eman A ToraihGenetics Unit, Department of Histology and Cell Biology, Faculty of Medicine, Suez Canal University, Ismailia, P.O. 41522, Egypt. emantoraih@gmail.com.
Mohammad H HusseinPulmonologist, Ministry of Health, Cairo, Egypt.
Essam Al AgeeliDepartment of Clinical Biochemistry (Medical Genetics), Faculty of Medicine, Jazan University, Jazan, Saudi Arabia.
Eman RiadDepartment of Chest Diseases and Tuberculosis, Faculty of Medicine, Suez Canal University, Ismailia, P.O. 41522, Egypt.
Nouran B AbdAllahDepartment of Pediatrics, Faculty of Medicine, Suez Canal University, Ismailia, Egypt.
Ghada M HelalDepartment of Medical Biochemistry, Faculty of Medicine, Mansoura University, Mansoura, Egypt.
Manal S FawzyDepartment of Medical Biochemistry, Faculty of Medicine, Suez Canal University, Ismailia, P.O. 41522, Egypt. manal2_khashana@ymail.com.
Suez Canal University · EGJazan University · SAMansoura University · EGMinistry of Health and Population · EG

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundSmall non-coding RNAs (microRNAs) have been evolved to master numerous cellular processes. Genetic variants within microRNA seed region might influence microRNA biogenesis and function. The study aimed at determining the role of microRNA-499 (MIR-499) gene family polymorphism as a marker for susceptibility and progression of bronchial asthma and to analyze the structural and functional impact of rs3746444 within the seed region.

methodsGenotyping for 192 participants (96 patients and 96 controls) in the discovery phase and 319 subjects (115 patients and 204 controls) in the replication phase was performed via Real Time-Polymerase Chain Reaction technology. Patients underwent the methacholine challenge test and biochemical analysis. Gene structural and functional analysis, target prediction, annotation clustering, and pathway enrichment analysis were executed. Predicted functional effect of rs37464443 SNP was analyzed.

resultsmiR-499 gene family is highly implicated in inflammation-related signaling pathways. Rs374644 (A > G) in MIR499A and MIR499B within the seed region could disrupt target genes and create new genes. The G variant was associated with high risk of developing asthma under all genetic association models (G versus A: OR = 3.27, 95% CI = 2.53-4.22; GG versus AA: OR = 9.52, 95% CI = 5.61-16.5; AG versus AA: OR = 2.13, 95% CI = 1.24-3.46; GG + AG versus AA: OR = 4.43, 95% CI = 2.88-6.82). GG genotype was associated with poor pre-bronchodilator FEV

conclusionsmiR-499 rs3746444 (A > G) polymorphism was associated with asthma susceptibility and bronchodilator response in Egyptian children and adolescents. Further functional analysis is warranted to develop more specific theranostic agents for selecting targeted therapy.

Indexed as

AdolescentAsthmaBase SequenceChildChild, PreschoolEgyptFemaleGenetic Predisposition to DiseaseGenetic VariationHumansMaleMicroRNAsPhylogenyPolymorphism, Single NucleotideReal-Time Polymerase Chain ReactionMicroRNAsMIRN499 microRNA, humanAirway hyper-responsivenessAsthmaEgyptiansmiR-499amiR-499bPolymorphismqRT-PCR

Identifiers

PMID28886711
PMCPMC5591547
OpenAlexW2750657179

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.