Evidence map›Paper›PMID 28884790›Full record

ArticleEvolution; international journal of organic evolution2017

Fitness change in relation to mutation number in spontaneous mutation accumulation lines of Chlamydomonas reinhardtii.

Susanne A Kraemer, Katharina B Böndel, Robert W Ness, Peter D Keightley, Nick Colegrave

Abstract read
In one paragraph

Article in Evolution; international journal of organic evolution, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. The genome-wide rate and spectrum of spontaneous mutations differ between haploid and diploid yeast.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors.

Susanne A KraemerInstitute of Evolutionary Biology, Ashworth Laboratories, University of Edinburgh, Edinburgh EH93FL, United Kingdom.ORCID 0000-0002-4418-1873
Katharina B BöndelInstitute of Evolutionary Biology, Ashworth Laboratories, University of Edinburgh, Edinburgh EH93FL, United Kingdom.
Robert W NessDepartment of Biology, William G. Davis Building, University of Toronto, Mississuaga L5L1C6, Canada.
Peter D KeightleyInstitute of Evolutionary Biology, Ashworth Laboratories, University of Edinburgh, Edinburgh EH93FL, United Kingdom.
Nick ColegraveInstitute of Evolutionary Biology, Ashworth Laboratories, University of Edinburgh, Edinburgh EH93FL, United Kingdom.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Although all genetic variation ultimately stems from mutations, their properties are difficult to study directly. Here, we used multiple mutation accumulation (MA) lines derived from five genetic backgrounds of the green algae Chlamydomonas reinhardtii that have been previously subjected to whole genome sequencing to investigate the relationship between the number of spontaneous mutations and change in fitness from a nonevolved ancestor. MA lines were on average less fit than their ancestors and we detected a significantly negative correlation between the change in fitness and the total number of accumulated mutations in the genome. Likewise, the number of mutations located within coding regions significantly and negatively impacted MA line fitness. We used the fitness data to parameterize a maximum likelihood model to estimate discrete categories of mutational effects, and found that models containing one to two mutational effect categories (one neutral and one deleterious category) fitted the data best. However, the best-fitting mutational effects models were highly dependent on the genetic background of the ancestral strain.

Indexed as

Genetic FitnessMutation AccumulationChlamydomonas reinhardtiiGene-Environment InteractionGenetic VariationModels, GeneticSelection, GeneticStress, PhysiologicalChlamydomonasmutation accumulationmutational effectsspontaneous mutations

Identifiers

PMID28884790
PMCPMC5765464

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.