Evidence map›Paper›PMID 28884021›Full record

ArticleMicrobial genomics2017

Genomic epidemiology of a national outbreak of post-surgical

Izzy Everall, Christiane Lourenço Nogueira, Josephine M Bryant, Leonor Sánchez-Busó, Erica Chimara, Rafael da Silva Duarte, Jesus Pais Ramos, Karla Valéria Batista Lima, Maria Luíza Lopes, Moises Palaci and 6 more

Open access · goldAbstract read
In one paragraph

Article in Microbial genomics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
0.9field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 41 citations in OpenAlex.

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  3. Drug susceptibility profiles ofJournal of medical microbiology · 2025
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  7. Genome-Scale Characterization ofInternational journal of molecular sciences · 2023
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  10. Mutation rates and adaptive variation among the clinically dominant clusters ofProceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  11. The European respiratory journal · 2023
    Article
  12. Article
  13. Train-the-Trainer as an Effective Approach to Building Global Networks of Experts in Genomic Surveillance of Antimicrobial Resistance (AMR).Clinical infectious diseases : an official publication of the Infectious Diseases Society of America · 2021
    Article
  14. Population Genomics ofAnnals of the American Thoracic Society · 2021
    Article
  15. Epidemiology ofThe Lancet. Microbe · 2021
    Observational
  16. Article
  17. Whole-Genome Sequences of Mycobacterium abscessus subsp.Microbiology resource announcements · 2021
    Article
  18. Stepwise pathogenic evolution ofScience (New York, N.Y.) · 2021
    Article
  19. Tolerance to Glutaraldehyde inFrontiers in microbiology · 2021
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 11 institutions in 2 countries.

Izzy Everall1​Wellcome Trust Sanger Institute, Hinxton, Cambridge, UK.
Christiane Lourenço Nogueira2​Departamento de Microbiologia, Imunologia e Parasitologia, Escola Paulista de Medicina, Universidade Federal de São Paulo, Brazil.
Josephine M Bryant3​Molecular Immunity Unit, University of Cambridge Department of Medicine, MRC Laboratory of Molecular Biology, Cambridge, UK.
Leonor Sánchez-Busó1​Wellcome Trust Sanger Institute, Hinxton, Cambridge, UK.
Erica Chimara4​Núcleo de Tuberculose e Micobacterioses, Instituto Adolfo Lutz Av. Dr. Arnaldo, 666 9o andar São Paulo, SP, Brazil.
Rafael da Silva Duarte5​Instituto de Microbiologia Professor Paulo de Góes, Universidade Federal do Rio de Janeiro, Brazil.
Jesus Pais Ramos6​Centro de Referência Professor Helio Fraga, Fiocruz, Brazil.
Karla Valéria Batista Lima7​Bacteriology and Mycology Section, Instituto Evandro Chagas, Para, Brazil.
Maria Luíza Lopes7​Bacteriology and Mycology Section, Instituto Evandro Chagas, Para, Brazil.
Moises Palaci8​Nucleo de Doencas Infecciosas, Universidade Federal do Espirito Santo, Brazil.
Andre Kipnis9​Departamento de Microbiologia, Universidade Federal de Goiás, Brazil.
Fernanda Monego10​Departamento de Medicina Veterinária, Universidade Federal do Paraná, Brazil.
R Andres Floto3​Molecular Immunity Unit, University of Cambridge Department of Medicine, MRC Laboratory of Molecular Biology, Cambridge, UK.
Julian Parkhill1​Wellcome Trust Sanger Institute, Hinxton, Cambridge, UK.
Sylvia Cardoso Leão2​Departamento de Microbiologia, Imunologia e Parasitologia, Escola Paulista de Medicina, Universidade Federal de São Paulo, Brazil.
Simon R Harris1​Wellcome Trust Sanger Institute, Hinxton, Cambridge, UK.
Wellcome Sanger Institute · GBInstituto Evandro Chagas · BRUniversidade Federal de São Paulo · BRFundação Oswaldo Cruz · BRInstituto Adolfo Lutz · BRMRC Laboratory of Molecular Biology · GBUniversidade Federal de Goiás · BRUniversidade Federal do Espírito Santo · BRUniversidade Federal do Paraná · BRUniversidade Federal do Rio de Janeiro · BRUniversity of Cambridge · GB

Funding

Wellcome TrustWellcome Trust 098051Wellcome Trust 10224/Z/15/ZWellcome Trust 107032AIA
6 · The paper itself

Abstract

An epidemic of post-surgical wound infections, caused by a non-tuberculous mycobacterium, has been on-going in Brazil. It has been unclear whether one or multiple lineages are responsible and whether their wide geographical distribution across Brazil is due to spread from a single point source or is the result of human-mediated transmission. 188 isolates, collected from nine Brazilian states, were whole genome sequenced and analysed using phylogenetic and comparative genomic approaches. The isolates from Brazil formed a single clade, which was estimated to have emerged in 2003. We observed temporal and geographic structure within the lineage that enabled us to infer the movement of sub-lineages across Brazil. The genome size of the Brazilian lineage was reduced relative to most strains in the three subspecies of

Indexed as

Disease OutbreaksAdaptation, BiologicalBacterial Typing TechniquesBrazilCross InfectionDisease Transmission, InfectiousGene DeletionGenes, BacterialGenomicsHumansMycobacterium abscessusMycobacterium Infections, NontuberculousPhenotypePhylogenyPlasmidsSurgical Wound InfectionGenomic epidemiologyMycobacterium abscessusnosocomial infectionsoutbreaktransmission

Identifiers

PMID28884021
PMCPMC5562415
OpenAlexW2610667267

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.