Evidence map›Paper›PMID 28883648›Full record

ArticleScientific reports2017

The utility of mtDNA and rDNA for barcoding and phylogeny of plant-parasitic nematodes from Longidoridae (Nematoda, Enoplea).

J E Palomares-Rius, C Cantalapiedra-Navarrete, A Archidona-Yuste, S A Subbotin, P Castillo

Open access · goldAbstract readEvaluation Study
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
11.7field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 53 citations in OpenAlex.

  1. Article
  2. First report of the complete mitochondrial genome of anInternational journal for parasitology. Parasites and wildlife · 2026
    Article
  3. Article
  4. Article
  5. Two New Reported Species ofJournal of nematology · 2025
    Article
  6. Review
  7. Review
  8. Article
  9. First Report ofJournal of nematology · 2022
    Article
  10. Article
  11. Remarkable Cryptic Diversity ofAnimals : an open access journal from MDPI · 2021
    Article
  12. Article
  13. Morphostatic Speciation within the Dagger NematodePlants (Basel, Switzerland) · 2020
    Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Description ofJournal of nematology · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 3 countries.

J E Palomares-RiusInstituto de Agricultura Sostenible (IAS), Agencia Estatal Consejo Superior de Investigaciones Científicas (CSIC), Avda. Menéndez Pidal s/n, 14004, Córdoba, Campus de Excelencia Internacional Agroalimentario, ceiA3, Spain. palomaresje@ias.csic.es.
C Cantalapiedra-NavarreteInstituto de Agricultura Sostenible (IAS), Agencia Estatal Consejo Superior de Investigaciones Científicas (CSIC), Avda. Menéndez Pidal s/n, 14004, Córdoba, Campus de Excelencia Internacional Agroalimentario, ceiA3, Spain.
A Archidona-YusteInstituto de Agricultura Sostenible (IAS), Agencia Estatal Consejo Superior de Investigaciones Científicas (CSIC), Avda. Menéndez Pidal s/n, 14004, Córdoba, Campus de Excelencia Internacional Agroalimentario, ceiA3, Spain.
S A SubbotinPlant Pest Diagnostic Center, California Department of Food and Agriculture, 3294 Meadowview Road, Sacramento, CA, 95832-1448, USA.
P CastilloInstituto de Agricultura Sostenible (IAS), Agencia Estatal Consejo Superior de Investigaciones Científicas (CSIC), Avda. Menéndez Pidal s/n, 14004, Córdoba, Campus de Excelencia Internacional Agroalimentario, ceiA3, Spain.
Consejo Superior de Investigaciones Científicas · ESInstituto de Agricultura Sostenible · ESCalifornia Department of Food and Agriculture · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The traditional identification of plant-parasitic nematode species by morphology and morphometric studies is very difficult because of high morphological variability that can lead to considerable overlap of many characteristics and their ambiguous interpretation. For this reason, it is essential to implement approaches to ensure accurate species identification. DNA barcoding aids in identification and advances species discovery. This study sought to unravel the use of the mitochondrial marker cytochrome c oxidase subunit 1 (coxI) as barcode for Longidoridae species identification, and as a phylogenetic marker. The results showed that mitochondrial and ribosomal markers could be used as barcoding markers, except for some species from the Xiphinema americanum group. The ITS1 region showed a promising role in barcoding for species identification because of the clear molecular variability among species. Some species presented important molecular variability in coxI. The analysis of the newly provided sequences and the sequences deposited in GenBank showed plausible misidentifications, and the use of voucher species and topotype specimens is a priority for this group of nematodes. The use of coxI and D2 and D3 expansion segments of the 28S rRNA gene did not clarify the phylogeny at the genus level.

Indexed as

AnimalsDNA Barcoding, TaxonomicDNA, HelminthDNA, MitochondrialDNA, RibosomalElectron Transport Complex IVNematodaPhylogenyPlant DiseasesSequence Analysis, DNADNA, HelminthDNA, MitochondrialDNA, RibosomalElectron Transport Complex IV

Identifiers

PMID28883648
PMCPMC5589882
OpenAlexW2751958021

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.