ArticleScientific reports2017
Genome-wide identification and co-expression network analysis provide insights into the roles of auxin response factor gene family in chickpea.
Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.
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23 citing papers in PubMed, 36 citations in OpenAlex.
- Plant Regeneration: Influencing Factors, Regulatory Networks, and Epigenetic Mechanisms.International journal of molecular sciences · 2026Review
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- Elucidating the role of exogenous melatonin in mitigating alkaline stress in soybeans across different growth stages: a transcriptomic and metabolomic approach.BMC plant biology · 2024Article
- Analysis of Auxin-Encoding Gene Family inPlants (Basel, Switzerland) · 2023Article
- The Knockdown ofPlants (Basel, Switzerland) · 2023Article
- Identification and Characterization of AUXIN Response Factor Gene Family Reveals Their Regulatory Network to Respond the Multi-Hormones Crosstalk during GA-Induced Grape Parthenocarpic Berry.International journal of molecular sciences · 2022Article
- Systematic Identification and Expression Analysis of the Auxin Response Factor (ARF) Gene Family inInternational journal of molecular sciences · 2022Article
- Genome-wide identification, in silico characterization and expression analysis of the RNA helicase gene family in chickpea (C. arietinum L.).Scientific reports · 2022Article
- Genome-Wide Investigation of theFrontiers in plant science · 2022Article
- Transcriptome Approach Reveals the Response Mechanism ofFrontiers in plant science · 2022Article
- Editorial: Abiotic stress: Molecular genetics and genomics, volume II.Frontiers in plant science · 2022Article
- Genome-wide identification of auxin response factor (Physiology and molecular biology of plants : an international journal of functional plant biology · 2021Article
- Circadian Rhythms in Legumes: What Do We Know and What Else Should We Explore?International journal of molecular sciences · 2021Review
- Dynamic changes of transcriptome of fifth-instar3 Biotech · 2021Article
- Genome-Wide Analysis of the Auxin/Indoleacetic Acid Gene Family and Response to Indole-3-Acetic Acid Stress in Tartary Buckwheat (International journal of genomics · 2021Article
- Genome-Wide Association Analysis for Phosphorus Use Efficiency Traits in Mungbean (Frontiers in plant science · 2020Article
- Auxin Response Factor 2A Is Part of the Regulatory Network Mediating Fruit Ripening Through Auxin-Ethylene Crosstalk in Durian.Frontiers in plant science · 2020Article
- Dynamic Transcriptome Changes Related to Oil Accumulation in Developing Soybean Seeds.International journal of molecular sciences · 2019Article
- Article
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Authors and funding
4 authors at 3 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Auxin response factors (ARFs) are the transcription factors that regulate auxin responses in various aspects of plant growth and development. Although genome-wide analysis of ARF gene family has been done in some species, no information is available regarding ARF genes in chickpea. In this study, we identified 28 ARF genes (CaARF) in the chickpea genome. Phylogenetic analysis revealed that CaARFs can be divided into four different groups. Duplication analysis revealed that 50% of CaARF genes arose from duplication events. We analyzed expression pattern of CaARFs in various developmental stages. CaARF16.3, CaARF17.1 and CaARF17.2 showed highest expression at initial stages of flower bud development, while CaARF6.2 had higher expression at later stages of flower development. Further, CaARF4.2, CaARF9.2, CaARF16.2 and CaARF7.1 exhibited differential expression under different abiotic stress conditions, suggesting their role in abiotic stress responses. Co-expression network analysis among CaARF, CaIAA and CaGH3 genes enabled us to recognize components involved in the regulatory network associated with CaARFs. Further, we identified microRNAs that target CaARFs and TAS3 locus that trigger production of trans-acting siRNAs targeting CaARFs. The analyses presented here provide comprehensive information on ARF family members and will help in elucidating their exact function in chickpea.
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