Evidence map›Paper›PMID 28882084›Full record

ArticleLeukemia & lymphoma2018

Genomic characterization of chromosome translocations in patients with T/myeloid mixed-phenotype acute leukemia.

Aparna Pallavajjala, Daehwan Kim, Tongbin Li, Gabriel Ghiaur, Richard J Jones, Kathleen H Burns, Steven L Salzberg, Yi Ning

Abstract read
In one paragraph

Article in Leukemia & lymphoma, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. FAT1 Gene Expression in Iranian Acute Lymphoid and Myeloid Leukemia Patients.International journal of hematology-oncology and stem cell research · 2023
    Article
  2. Review
  3. Enhancer Hijacking Drives OncogenicCancer discovery · 2021
    Article
  4. Article
  5. Article
  6. Review
  7. Blood advances · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Aparna Pallavajjalaa Department of Pathology , Johns Hopkins University School of Medicine , Baltimore , MD , USA.
Daehwan Kimb Center for Computational Biology , McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine , Baltimore , MD , USA.
Tongbin Lic AccuraScience LLC , Johnston , IA , USA.
Gabriel Ghiaurd Sidney Kimmel Cancer Center at Johns Hopkins, Johns Hopkins University School of Medicine , Baltimore , MD , USA.
Richard J Jonesd Sidney Kimmel Cancer Center at Johns Hopkins, Johns Hopkins University School of Medicine , Baltimore , MD , USA.
Kathleen H Burnsa Department of Pathology , Johns Hopkins University School of Medicine , Baltimore , MD , USA.
Steven L Salzbergb Center for Computational Biology , McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine , Baltimore , MD , USA.
Yi Ninga Department of Pathology , Johns Hopkins University School of Medicine , Baltimore , MD , USA.

Funding

Translational Research Central ServicesP30CA006973 · NCI · JOHNS HOPKINS UNIVERSITY · PI WILLIAM George NELSON · 1985 to 2026
$208.6M
NCI NIH HHS P30 CA006973
6 · The paper itself

Abstract

Mixed-phenotype acute leukemia (MPAL) is a progenitor type of leukemia with ambiguous expression of lineage markers. The diagnosis of MPAL is based on flow cytometric analysis of immunophenotype, which commonly identifies myeloid lineage markers as well as B- or T- lymphoid lineage markers on leukemic blasts. Due to the rare occurrence of this disease, few studies have delineated the molecular bases of MPAL. Combining conventional karyotyping with whole genomic sequencing (WGS) and RNA sequencing (RNA-seq), we report here our identification and characterization of chromosome translocations, gene mutations and gene expression profile in four patients with T/Myeloid MPAL, including two t(6;14)(q25;q32) one t(8;14)(q24.2;q32) and one t(7;8)(p14;q24.2). Notably, seven of the eight translocation breakpoints reside in the non-coding regions and their locations appear to be shared by two or more patients. Gene expression analysis of matched diagnostic vs. remission samples provided evidence of transcriptomes alteration involving nucleosome organization and chromatin assembly.

Indexed as

Gene Expression Regulation, LeukemicTranslocation, GeneticAdultBiomarkers, TumorChromosomes, HumanFollow-Up StudiesGenomicsHumansImmunophenotypingLeukemia, Biphenotypic, AcuteLeukemia, Myeloid, AcuteMaleMiddle AgedPhenotypePrecursor T-Cell Lymphoblastic Leukemia-LymphomaPrognosisBiomarkers, TumorcytogeneticsLeukemic progenitor cellsmolecular genetics

Identifiers

PMID28882084
PMCPMC6390477

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.