Evidence map›Paper›PMID 28882023›Full record

ArticleCancer research and treatment2018

APEX1 Polymorphism and Mercaptopurine-Related Early Onset Neutropenia in Pediatric Acute Lymphoblastic Leukemia.

Hyery Kim, Heewon Seo, Yoomi Park, Byung-Joo Min, Myung-Eui Seo, Kyung Duk Park, Hee Young Shin, Ju Han Kim, Hyoung Jin Kang

Open access · diamondAbstract read
In one paragraph

Article in Cancer research and treatment, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed, 1 pooled it
2.7field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 1 synthesis or guideline pooled it, 20 citations in OpenAlex.

  1. Association ofHaematologica · 2024
    Pooled it
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  8. The Effect ofChildren (Basel, Switzerland) · 2021
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  16. In vivo (Athens, Greece)
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Hyery KimDepartment of Pediatrics, Asan Medical Center, University of Ulsan College of Medicine, Seoul, Korea.
Heewon SeoDivision of Biomedical Informatics, Seoul National University College of Medicine, Seoul, Korea.
Yoomi ParkDivision of Biomedical Informatics, Seoul National University College of Medicine, Seoul, Korea.
Byung-Joo MinDivision of Biomedical Informatics, Seoul National University College of Medicine, Seoul, Korea.
Myung-Eui SeoDivision of Biomedical Informatics, Seoul National University College of Medicine, Seoul, Korea.
Kyung Duk ParkDepartment of Pediatrics, Cancer Research Institute, Seoul National University College of Medicine, Seoul, Korea.
Hee Young ShinDepartment of Pediatrics, Cancer Research Institute, Seoul National University College of Medicine, Seoul, Korea.
Ju Han KimDivision of Biomedical Informatics, Seoul National University College of Medicine, Seoul, Korea.
Hyoung Jin KangDepartment of Pediatrics, Cancer Research Institute, Seoul National University College of Medicine, Seoul, Korea.
Seoul National University · KRSeoul National University Hospital · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

purposeMercaptopurine (MP) is one of the main chemotherapeutics for acute lymphoblastic leukemia (ALL). To improve treatment outcomes, constant MP dose titration is essential to maintain steady drug exposure, while minimizing myelosuppression. We performed two-stage analyses to identify genetic determinants of MP-related neutropenia in Korean pediatric ALL patients. MATERIALS AND

methodsTargeted sequencing of 40 patients who exhibited definite MP intolerance was conducted using a novel panel of 211 pharmacogenetic-related genes, and subsequent analysis was performed with 185 patients.

resultsUsing bioinformatics tools and genetic data, four functionally interesting variants were selected (ABCC4, APEX1, CYP1A1, and CYP4F2). Including four variants, 23 variants in 12 genes potentially linked to MP adverse reactions were selected as final candidates for subsequent analysis in 185 patients. Ultimately, a variant allele in APEX1 rs2307486was found to be strongly associated with MP-induced neutropenia that occurred within 28 days of initiating MP (odds ratio, 3.44; p=0.02). Moreover, the cumulative incidence of MP-related neutropenia was significantly higher in patients with APEX1 rs2307486 variants, as GG genotypes were associated with the highest cumulative incidence (p < 0.01). NUDT15 rs116855232 variants were strongly associated with a higher cumulative incidence of neutropenia (p < 0.01), and a lower median dose of tolerated MP throughout maintenance treatment (p < 0.01).

conclusionWe have identified that APEX1 rs2307486 variants conferred an increased risk of MP-related early onset neutropenia. APEX1 and NUDT15 both contribute to cell protection from DNA damage or misincorporation, so alleles that impair the function of either gene may affect MP sensitivities, thereby inducing MP-related neutropenia.

Indexed as

Polymorphism, Single NucleotideAdolescentChildChild, PreschoolDNA-(Apurinic or Apyrimidinic Site) LyaseFemaleGenotypeHumansInfantMaleMercaptopurineNeutropeniaOdds RatioPrecursor Cell Lymphoblastic Leukemia-LymphomaSequence Analysis, DNAAPEX1 protein, humanDNA-(Apurinic or Apyrimidinic Site) LyaseMercaptopurine6-MercaptopurineAcute lymphoblastic leukemiaAPEX1NeutropeniaNUDT15Pediatrics

Identifiers

PMID28882023
PMCPMC6056975
OpenAlexW2751953081

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.