Evidence map›Paper›PMID 28881577›Full record

ArticleOncotarget2017

A comprehensively characterized cell line panel highly representative of clinical ovarian high-grade serous carcinomas.

Kelsie L Thu, Mahboubeh Papari-Zareei, Victor Stastny, Kai Song, Michael Peyton, Victor D Martinez, Yu-An Zhang, Isabel B Castro, Marileila Varella-Garcia, Hanquan Liang and 9 more

Abstract read
In one paragraph

Article in Oncotarget, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed.

  1. Trial
  2. Article
  3. Exploiting a living biobank to delineate mechanisms underlying disease-specific chromosome instability.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2023
    Review
  4. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors.

Kelsie L Thu *British Columbia Cancer Agency Research Centre and University of British Columbia, Vancouver, BC, Canada.
Mahboubeh Papari-Zareei *Hamon Center for Therapeutic Oncology Research, UT Southwestern Medical Center, Dallas, TX, USA.
Victor StastnyHamon Center for Therapeutic Oncology Research, UT Southwestern Medical Center, Dallas, TX, USA.
Kai SongHamon Center for Therapeutic Oncology Research, UT Southwestern Medical Center, Dallas, TX, USA.
Michael PeytonHamon Center for Therapeutic Oncology Research, UT Southwestern Medical Center, Dallas, TX, USA.
Victor D MartinezBritish Columbia Cancer Agency Research Centre and University of British Columbia, Vancouver, BC, Canada.
Yu-An ZhangHamon Center for Therapeutic Oncology Research, UT Southwestern Medical Center, Dallas, TX, USA.
Isabel B CastroDivision of Medical Oncology, University of Colorado Denver School of Medicine, Aurora, CO, USA.
Marileila Varella-GarciaDivision of Medical Oncology, University of Colorado Denver School of Medicine, Aurora, CO, USA.
Hanquan LiangEugene McDermott Center for Human Growth & Development, UT Southwestern Medical Center, Dallas, TX, USA.
Chao XingEugene McDermott Center for Human Growth & Development, UT Southwestern Medical Center, Dallas, TX, USA.
Ralf KittlerEugene McDermott Center for Human Growth & Development, UT Southwestern Medical Center, Dallas, TX, USA.
Sara MilchgrubDepartment of Pathology, UT Southwestern Medical Center, Dallas, TX, USA.
Diego H CastrillonDepartment of Pathology and Simmons Comprehensive Cancer Center, UT Southwestern Medical Center, Dallas, TX, USA.
Heather L DavidsonCell Biology & Biochemistry, Internal Medicine, and Pediatrics, School of Medicine Texas Tech University Health Sciences Center, Lubbock, TX, USA.
C Patrick ReynoldsCell Biology & Biochemistry, Internal Medicine, and Pediatrics, School of Medicine Texas Tech University Health Sciences Center, Lubbock, TX, USA.
Wan L LamBritish Columbia Cancer Agency Research Centre and University of British Columbia, Vancouver, BC, Canada.
Jayanthi LeaObstetrics & Gynecology, UT Southwestern Medical Center, Dallas, TX, USA.
Adi F GazdarHamon Center for Therapeutic Oncology Research, Department of Pathology and Simmons Comprehensive Cancer Center, UT Southwestern Medical Center, Dallas, TX, USA.

Funding

University of Colorado Cancer Center Support Grant - Lung Cancer Patient-Derived Xenografts with Autologous Human Immune SystemsP30CA046934 · NCI · UNIVERSITY OF COLORADO DENVER · PI James V Degregori · 1988 to 2026
$117.0M
UT Southwestern Center for Translational Medicine (UL1/KL2/TL1)UL1TR001105 · NCATS · UT SOUTHWESTERN MEDICAL CENTER · PI TOTO, ROBERT DANIEL · 2013 to 2017
$24.5M
Short-Term Internship Program for Undergraduates and Health Professional StudentsR25HL103286 · NHLBI · UNIVERSITY OF COLORADO DENVER · PI Sonia Castro Flores, Meredith A Tennis · 2010 to 2026
$2.0M
NCATS NIH HHS UL1 TR001105NCI NIH HHS P30 CA046934NHLBI NIH HHS R25 HL103286
6 · The paper itself

Abstract

Recent literature suggests that most widely used ovarian cancer (OVCA) cell models do not recapitulate the molecular features of clinical tumors. To address this limitation, we generated 18 cell lines and 3 corresponding patient-derived xenografts predominantly from high-grade serous carcinoma (HGSOC) peritoneal effusions. Comprehensive genomic characterization and comparison of each model to its parental tumor demonstrated a high degree of molecular similarity. Our characterization included whole exome-sequencing and copy number profiling for cell lines, xenografts, and matched non-malignant tissues, and DNA methylation, gene expression, and spectral karyotyping for a subset of specimens. Compared to the Cancer Genome Atlas (TCGA), our models more closely resembled HGSOC than any other tumor type, justifying their validity as OVCA models. Our meticulously characterized models provide a crucial resource for the OVCA research community that will advance translational findings and ultimately lead to clinical applications.

Indexed as

cell modelsexome-sequencinggenomic characterizationhigh-grade serous ovarian carcinomapatient-derived xenograft

Identifiers

PMID28881577
PMCPMC5584155

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.