Evidence map›Paper›PMID 28880278›Full record

ArticleNature protocols2017

Preparation of biogenic gas vesicle nanostructures for use as contrast agents for ultrasound and MRI.

Anupama Lakshmanan, George J Lu, Arash Farhadi, Suchita P Nety, Martin Kunth, Audrey Lee-Gosselin, David Maresca, Raymond W Bourdeau, Melissa Yin, Judy Yan and 5 more

Open access · greenAbstract read
In one paragraph

Article in Nature protocols, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 92 papers.

0numbers the graph read from it
0cells of the map it votes in
92citing papers in PubMed
8.4field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

92 citing papers in PubMed, 178 citations in OpenAlex.

  1. Targeted Mechanogenetics to Modulate Specific Deep Neural Circuits.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
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  8. Ultrasound-driven mechanophore activation in living plants.Proceedings of the National Academy of Sciences of the United States of America · 2026
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  9. Enzymatic microbubble robots.Nature nanotechnology · 2026
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  12. The Binding Affinities of Serum Proteins to Nanoparticles.Journal of the American Chemical Society · 2025
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  13. Review
  14. Acoustic percolation switches enable targeted drug delivery controlled by diagnostic ultrasound.Proceedings of the National Academy of Sciences of the United States of America · 2025
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  20. UltrasensitiveAdvanced science (Weinheim, Baden-Wurttemberg, Germany) · 2025
    Review

32 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 3 institutions in 3 countries.

Anupama LakshmananDivision of Biology and Biological Engineering, California Institute of Technology, Pasadena, California, USA.
George J LuDivision of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, California, USA.
Arash FarhadiDivision of Biology and Biological Engineering, California Institute of Technology, Pasadena, California, USA.
Suchita P NetyDivision of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, California, USA.
Martin KunthMolecular Imaging, Department of Structural Biology, Leibniz-Forschungsinstitute für Molekulare Pharmakologie, Berlin, Germany.
Audrey Lee-GosselinDivision of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, California, USA.
David MarescaDivision of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, California, USA.
Raymond W BourdeauDivision of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, California, USA.
Melissa YinSunnybrook Research Institute, University of Toronto, Toronto, Ontario, Canada.
Judy YanSunnybrook Research Institute, University of Toronto, Toronto, Ontario, Canada.
Christopher WitteMolecular Imaging, Department of Structural Biology, Leibniz-Forschungsinstitute für Molekulare Pharmakologie, Berlin, Germany.
Dina MaloundaDivision of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, California, USA.
F Stuart FosterSunnybrook Research Institute, University of Toronto, Toronto, Ontario, Canada.
Leif SchröderMolecular Imaging, Department of Structural Biology, Leibniz-Forschungsinstitute für Molekulare Pharmakologie, Berlin, Germany.
Mikhail G ShapiroDivision of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, California, USA.ORCID http://orcid.org/0000-0002-0291-4215
California Institute of Technology · USLeibniz-Forschungsinstitut für Molekulare Pharmakologie · DESunnybrook Health Science Centre · CA

Funding

Biogenic Gas Nanostructures As Molecular Imaging Reporters For UltrasoundR01EB018975 · NIBIB · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI Mikhail Shapiro · 2014 to 2026
$5.9M
NIBIB NIH HHS R01 EB018975
6 · The paper itself

Abstract

Gas vesicles (GVs) are a unique class of gas-filled protein nanostructures that are detectable at subnanomolar concentrations and whose physical properties allow them to serve as highly sensitive imaging agents for ultrasound and MRI. Here we provide a protocol for isolating GVs from native and heterologous host organisms, functionalizing these nanostructures with moieties for targeting and fluorescence, characterizing their biophysical properties and imaging them using ultrasound and MRI. GVs can be isolated from natural cyanobacterial and haloarchaeal host organisms or from Escherichia coli expressing a heterologous GV gene cluster and purified using buoyancy-assisted techniques. They can then be modified by replacing surface-bound proteins with engineered, heterologously expressed variants or through chemical conjugation, resulting in altered mechanical, surface and targeting properties. Pressurized absorbance spectroscopy is used to characterize their mechanical properties, whereas dynamic light scattering (DLS)and transmission electron microscopy (TEM) are used to determine nanoparticle size and morphology, respectively. GVs can then be imaged with ultrasound in vitro and in vivo using pulse sequences optimized for their detection versus background. They can also be imaged with hyperpolarized xenon MRI using chemical exchange saturation transfer between GV-bound and dissolved xenon-a technique currently implemented in vitro. Taking 3-8 d to prepare, these genetically encodable nanostructures enable multimodal, noninvasive biological imaging with high sensitivity and potential for molecular targeting.

Indexed as

Contrast MediaEscherichia coliMagnetic Resonance ImagingMicroscopy, Electron, TransmissionNanostructuresUltrasonographyContrast Media

Identifiers

PMID28880278
PMCPMC6185898
OpenAlexW2752490028

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.