Evidence map›Paper›PMID 28878819›Full record

ArticleJournal of biological engineering2017

Construction of an easy-to-use CRISPR-Cas9 system by patching a newly designed EXIT circuit.

Qiang Tang, Chunbo Lou, Shuang-Jiang Liu

Abstract read
In one paragraph

Article in Journal of biological engineering, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Review
  2. CRISPR-Cas9-assisted genome editing inbioRxiv : the preprint server for biology · 2024
    Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Qiang TangState Key Laboratory of Microbial Resources and Environmental Microbiology Research Center, Chinese Academy of Sciences, Beijing, 100101 China.
Chunbo LouCAS Key Laboratory for Microbial Physiology and Metabolic Engineering, Chinese Academy of Sciences, Beijing, 100101 China.
Shuang-Jiang LiuState Key Laboratory of Microbial Resources and Environmental Microbiology Research Center, Chinese Academy of Sciences, Beijing, 100101 China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundPlasmid-borne genetic editing tools, including the widely used CRISPR-Cas9 system, have greatly facilitated bacterial programming to obtain novel functionalities. However, the lack of effective post-editing plasmid elimination methods impedes follow-up genetic manipulation or application. Conventional strategies including exposure to physical and chemical treatments, or exploiting temperature-sensitive replication origins have several drawbacks (e.g., they are limited for efficiency and are time-consuming). Therefore, the demand is apparent for easy and rapid elimination of the tool plasmids from their bacterial hosts after genetic manipulation.

resultsTo bridge this gap, we designed a novel EXIT circuit with the homing endonuclease, which can be exploited for rapid and efficient elimination of various plasmids with diverse replication origins. As a proof of concept, we validated the EXIT circuit in

conclusionsOur novel EXIT circuit, which exploits the homing endonuclease I-

Indexed as

Atrazine-degradationCRISPR-Cas9Easy-to-useEscherichia coliEXIT circuitGenome editingI-SceIOne-stepPlasmid elimination

Identifiers

PMID28878819
PMCPMC5582390

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.