Evidence map›Paper›PMID 28878309›Full record

ArticleScientific reports2017

Identification of oriT and a recombination hot spot in the IncA/C plasmid backbone.

Anna Hegyi, Mónika Szabó, Ferenc Olasz, János Kiss

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
0.9field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 22 citations in OpenAlex.

  1. Article
  2. Review
  3. Towards quantifying plasmid similarity.Microbial genomics · 2024
    Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Transferable Plasmids ofFrontiers in microbiology · 2020
    Review
  14. Identification and Characterization ofFrontiers in microbiology · 2019
    Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Anna HegyiAgricultural Biotechnology Institute, National Agricultural Research and Innovation Centre, 4. Szent-Györgyi Albert str., Gödöllő, Hungary.
Mónika SzabóAgricultural Biotechnology Institute, National Agricultural Research and Innovation Centre, 4. Szent-Györgyi Albert str., Gödöllő, Hungary.
Ferenc OlaszAgricultural Biotechnology Institute, National Agricultural Research and Innovation Centre, 4. Szent-Györgyi Albert str., Gödöllő, Hungary.
János KissAgricultural Biotechnology Institute, National Agricultural Research and Innovation Centre, 4. Szent-Györgyi Albert str., Gödöllő, Hungary. kiss.janos@abc.naik.hu.
Agricultural Biotechnology Institute · HUNational Agricultural Research and Innovation Centre · HU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Dissemination of multiresistance has been accelerating among pathogenic bacteria in recent decades. The broad host-range conjugative plasmids of the IncA/C family are effective vehicles of resistance determinants in Gram-negative bacteria. Although more than 150 family members have been sequenced to date, their conjugation system and other functions encoded by the conserved plasmid backbone have been poorly characterized. The key cis-acting locus, the origin of transfer (oriT), has not yet been unambiguously identified. We present evidence that IncA/C plasmids have a single oriT locus immediately upstream of the mobI gene encoding an indispensable transfer factor. The fully active oriT spans ca. 150-bp AT-rich region overlapping the promoters of mobI and contains multiple inverted and direct repeats. Within this region, the core domain of oriT with reduced but detectable transfer activity was confined to a 70-bp segment containing two inverted repeats and one copy of a 14-bp direct repeat. In addition to oriT, a second locus consisting of a 14-bp imperfect inverted repeat was also identified, which mimicked the function of oriT but which was found to be a recombination site. Recombination between two identical copies of these sites is RecA-independent, requires a plasmid-encoded recombinase and resembles the functioning of dimer-resolution systems.

Indexed as

Recombination, GeneticComputational BiologyConjugation, GeneticEvolution, MolecularGene Expression ProfilingGene Knockout TechniquesGenes, BacterialMultigene FamilyMutationPlasmidsPromoter Regions, Genetic

Identifiers

PMID28878309
PMCPMC5587640
OpenAlexW2750953301

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.