Evidence map›Paper›PMID 28878244›Full record

ArticleNature communications2017

The Gcn4 transcription factor reduces protein synthesis capacity and extends yeast lifespan.

Nitish Mittal, Joao C Guimaraes, Thomas Gross, Alexander Schmidt, Arnau Vina-Vilaseca, Danny D Nedialkova, Florian Aeschimann, Sebastian A Leidel, Anne Spang, Mihaela Zavolan

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 63 papers.

0numbers the graph read from it
0cells of the map it votes in
63citing papers in PubMed
4.6field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

63 citing papers in PubMed, 110 citations in OpenAlex.

  1. Article
  2. Suppression rather than activation of the integrated stress response (GCN2-ATF4) pathway extends lifespan in the fly.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
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  16. Multiomics ofInternational journal of molecular sciences · 2023
    Article
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  18. Article
  19. Article
  20. A comprehensive review and comparison of L-tryptophan biosynthesis inFrontiers in bioengineering and biotechnology · 2023
    Review

3 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 2 countries.

Nitish MittalComputational and Systems Biology, Biozentrum, University of Basel, Klingelbergstrasse 50-70, 4056, Basel, Switzerland. nitish.mittal@unibas.ch.
Joao C GuimaraesComputational and Systems Biology, Biozentrum, University of Basel, Klingelbergstrasse 50-70, 4056, Basel, Switzerland.ORCID http://orcid.org/0000-0002-1664-472X
Thomas GrossGrowth and Development, Biozentrum, University of Basel, Klingelbergstrasse 50-70, 4056, Basel, Switzerland.
Alexander SchmidtProteomics Core Facility, Biozentrum, University of Basel, Klingelbergstrasse 50-70, 4056, Basel, Switzerland.
Arnau Vina-VilasecaComputational and Systems Biology, Biozentrum, University of Basel, Klingelbergstrasse 50-70, 4056, Basel, Switzerland.
Danny D NedialkovaMax Planck Research Group for RNA Biology, Max Planck Institute for Molecular Biomedicine, Von-Esmarch-Strasse 54, 48149, Münster, Germany.
Florian AeschimannFriedrich Miescher Institute for Biomedical Research, Maulbeerstrasse 66, 4002, Basel, Switzerland.
Sebastian A LeidelMax Planck Research Group for RNA Biology, Max Planck Institute for Molecular Biomedicine, Von-Esmarch-Strasse 54, 48149, Münster, Germany.
Anne SpangGrowth and Development, Biozentrum, University of Basel, Klingelbergstrasse 50-70, 4056, Basel, Switzerland.ORCID http://orcid.org/0000-0002-2387-6203
Mihaela ZavolanComputational and Systems Biology, Biozentrum, University of Basel, Klingelbergstrasse 50-70, 4056, Basel, Switzerland. mihaela.zavolan@unibas.ch.
University of Basel · CHAugenstern · DEFriedrich Miescher Institute · CHMax Planck Institute for Molecular Biomedicine · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In Saccharomyces cerevisiae, deletion of large ribosomal subunit protein-encoding genes increases the replicative lifespan in a Gcn4-dependent manner. However, how Gcn4, a key transcriptional activator of amino acid biosynthesis genes, increases lifespan, is unknown. Here we show that Gcn4 acts as a repressor of protein synthesis. By analyzing the messenger RNA and protein abundance, ribosome occupancy and protein synthesis rate in various yeast strains, we demonstrate that Gcn4 is sufficient to reduce protein synthesis and increase yeast lifespan. Chromatin immunoprecipitation reveals Gcn4 binding not only at genes that are activated, but also at genes, some encoding ribosomal proteins, that are repressed upon Gcn4 overexpression. The promoters of repressed genes contain Rap1 binding motifs. Our data suggest that Gcn4 is a central regulator of protein synthesis under multiple perturbations, including ribosomal protein gene deletions, calorie restriction, and rapamycin treatment, and provide an explanation for its role in longevity and stress response.The transcription factor Gcn4 is known to regulate yeast amino acid synthesis. Here, the authors show that Gcn4 also acts as a repressor of protein biosynthesis in a range of conditions that enhance yeast lifespan, such as ribosomal protein knockout, calorie restriction or mTOR inhibition.

Indexed as

Protein BiosynthesisBasic-Leucine Zipper Transcription FactorsGene Expression Regulation, FungalGenes, FungalOpen Reading FramesRibosomesSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsUp-RegulationBasic-Leucine Zipper Transcription FactorsGCN4 protein, S cerevisiaeSaccharomyces cerevisiae Proteins

Identifiers

PMID28878244
PMCPMC5587724
OpenAlexW2751814741

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.