Evidence map›Paper›PMID 28878216›Full record

ArticleScientific reports2017

Environmental stress is the major cause of transcriptomic and proteomic changes in GM and non-GM plants.

Rita Batista, Cátia Fonseca, Sébastien Planchon, Sónia Negrão, Jenny Renaut, M Margarida Oliveira

Abstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Review
  7. Metabolic Analysis RevealsMetabolites · 2021
    Article
  8. Review
  9. Article
  10. Article
  11. Review
  12. The evolving EU regulatory framework for precision breeding.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Rita BatistaDepartamento de Alimentação e Nutrição, Instituto Nacional de Saúde Dr. Ricardo Jorge, Av. Padre Cruz, 1649-016, Lisboa, Portugal. rita.batista@insa.min-saude.pt.
Cátia FonsecaDepartamento de Alimentação e Nutrição, Instituto Nacional de Saúde Dr. Ricardo Jorge, Av. Padre Cruz, 1649-016, Lisboa, Portugal.
Sébastien PlanchonLuxembourg Institute of Science and Technology "Environmental Research and Innovation" (ERIN) department 5, avenue des Hauts- Fourneaux, L-4362, Esch-sur-Alzette, Luxembourg.
Sónia NegrãoDivision of Biological and Environmental Sciences and Engineering, King Abdullah University of Science and Technology (KAUST), Thuwal, 23955-6900, Saudi Arabia.
Jenny RenautLuxembourg Institute of Science and Technology "Environmental Research and Innovation" (ERIN) department 5, avenue des Hauts- Fourneaux, L-4362, Esch-sur-Alzette, Luxembourg.
M Margarida OliveiraInstituto de Tecnologia Química e Biológica António Xavier, Universidade Nova de Lisboa (ITQB NOVA), Av. da República, 2780-157, Oeiras, Portugal.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The approval of genetically modified (GM) crops is preceded by years of intensive research to demonstrate safety to humans and environment. We recently showed that in vitro culture stress is the major factor influencing proteomic differences of GM vs. non-GM plants. This made us question the number of generations needed to erase such "memory". We also wondered about the relevance of alterations promoted by transgenesis as compared to environment-induced ones. Here we followed three rice lines (1-control, 1-transgenic and 1-negative segregant) throughout eight generations after transgenesis combining proteomics and transcriptomics, and further analyzed their response to salinity stress on the F6 generation. Our results show that: (a) differences promoted during genetic modification are mainly short-term physiological changes, attenuating throughout generations, and (b) environmental stress may cause far more proteomic/transcriptomic alterations than transgenesis. Based on our data, we question what is really relevant in risk assessment design for GM food crops.

Indexed as

EnvironmentProteomeStress, PhysiologicalTranscriptomeComputational BiologyGene Expression ProfilingGene Expression Regulation, PlantGene OntologyOryzaPlantsPlants, Genetically ModifiedProteomicsSalt StressProteome

Identifiers

PMID28878216
PMCPMC5587699

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.