Evidence map›Paper›PMID 28877760›Full record

ArticleBMC research notes2017

SBMLPkgSpec: a LaTeX style file for SBML package specification documents.

Michael Hucka

Abstract read
In one paragraph

Article in BMC research notes, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

1 author.

Michael HuckaDepartment of Computing and Mathematical Sciences, California Institute of Technology, 1200 E. California Blvd., Pasadena, California, 91125, USA. mhucka@caltech.edu.ORCID http://orcid.org/0000-0001-9105-5960

Funding

Continued Support of Essential SBML Software and Community ResourcesR01GM070923 · NIGMS · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI HUCKA, MICHAEL · 2004 to 2018
$8.0M
NIGMS NIH HHS R01 GM070923
6 · The paper itself

Abstract

objectiveThe Systems Biology Markup Language (SBML) is a popular open format for storing and exchanging computational models in biology. The definition of SBML is captured in formal specification documents. SBMLPkgSpec is a LaTeX document style intended to fill the need for a standard format for writing such specification documents.

resultsSpecification documents for SBML Level 3 extensions (known as packages in SBML) are made more uniform with the use of a standard template. SBMLPkgSpec is a LaTeX class that provides a document framework for SBML Level 3 package specifications, to simplify the work of document authors while improving the overall quality of the family of SBML specifications.

Indexed as

DocumentationProgramming LanguagesSoftwareSystems BiologyComputational biologyData formatsSBMLSimulationSoftwareSystems biologyXML

Identifiers

PMID28877760
PMCPMC5588604

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.