Evidence map›Paper›PMID 28877467›Full record

ArticleCell reports2017

The SET1 Complex Selects Actively Transcribed Target Genes via Multivalent Interaction with CpG Island Chromatin.

David A Brown, Vincenzo Di Cerbo, Angelika Feldmann, Jaewoo Ahn, Shinsuke Ito, Neil P Blackledge, Manabu Nakayama, Michael McClellan, Emilia Dimitrova, Anne H Turberfield and 7 more

Open access · goldAbstract read
In one paragraph

Article in Cell reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 68 papers.

0numbers the graph read from it
0cells of the map it votes in
68citing papers in PubMed
4.8field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

68 citing papers in PubMed, 110 citations in OpenAlex.

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8 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 4 institutions in 4 countries.

David A BrownDepartment of Biochemistry, University of Oxford, Oxford, OX1 3QU, UK.
Vincenzo Di CerboDepartment of Biochemistry, University of Oxford, Oxford, OX1 3QU, UK.
Angelika FeldmannDepartment of Biochemistry, University of Oxford, Oxford, OX1 3QU, UK.
Jaewoo AhnDepartment of Pharmacology, University of Colorado School of Medicine, Aurora, CO 80045, USA.
Shinsuke ItoLaboratory for Developmental Genetics, RIKEN Center for Integrative Medical Sciences (IMS), 1-7-2 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan.
Neil P BlackledgeDepartment of Biochemistry, University of Oxford, Oxford, OX1 3QU, UK.
Manabu NakayamaLaboratory for Developmental Genetics, RIKEN Center for Integrative Medical Sciences (IMS), 1-7-2 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan.
Michael McClellanLudwig Cancer Research, Nuffield Department of Medicine, University of Oxford, Oxford OX3 7DQ, UK.
Emilia DimitrovaDepartment of Biochemistry, University of Oxford, Oxford, OX1 3QU, UK.
Anne H TurberfieldDepartment of Biochemistry, University of Oxford, Oxford, OX1 3QU, UK.
Hannah K LongDepartment of Biochemistry, University of Oxford, Oxford, OX1 3QU, UK.
Hamish W KingDepartment of Biochemistry, University of Oxford, Oxford, OX1 3QU, UK.
Skirmantas KriaucionisLudwig Cancer Research, Nuffield Department of Medicine, University of Oxford, Oxford OX3 7DQ, UK.
Lothar SchermellehDepartment of Biochemistry, University of Oxford, Oxford, OX1 3QU, UK.
Tatiana G KutateladzeDepartment of Pharmacology, University of Colorado School of Medicine, Aurora, CO 80045, USA.
Haruhiko KosekiLaboratory for Developmental Genetics, RIKEN Center for Integrative Medical Sciences (IMS), 1-7-2 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan.
Robert J KloseDepartment of Biochemistry, University of Oxford, Oxford, OX1 3QU, UK. Electronic address: rob.klose@bioch.ox.ac.uk.
University of Oxford · GBRIKEN Center for Integrative Medical Sciences · JPLudwig Cancer Research · BEUniversity of Colorado Denver · US

Funding

University of Colorado Cancer Center Support Grant - Lung Cancer Patient-Derived Xenografts with Autologous Human Immune SystemsP30CA046934 · NCI · UNIVERSITY OF COLORADO DENVER · PI James V Degregori · 1988 to 2026
$117.0M
Epigenetic regulation by PHF1R01GM106416 · NIGMS · UNIVERSITY OF COLORADO DENVER · PI KUTATELADZE, TATIANA G · 2015 to 2018
$1.5M
Molecular mechanism of chromatin targeting by BRPF1R01GM100907 · NIGMS · UNIVERSITY OF COLORADO DENVER · PI KUTATELADZE, TATIANA G · 2015 to 2018
$1.4M
Biotechnology and Biological Sciences Research Council BB/M001873/1NCI NIH HHS P30 CA046934NIGMS NIH HHS R01 GM100907NIGMS NIH HHS R01 GM106416Wellcome Trust
6 · The paper itself

Abstract

Chromatin modifications and the promoter-associated epigenome are important for the regulation of gene expression. However, the mechanisms by which chromatin-modifying complexes are targeted to the appropriate gene promoters in vertebrates and how they influence gene expression have remained poorly defined. Here, using a combination of live-cell imaging and functional genomics, we discover that the vertebrate SET1 complex is targeted to actively transcribed gene promoters through CFP1, which engages in a form of multivalent chromatin reading that involves recognition of non-methylated DNA and histone H3 lysine 4 trimethylation (H3K4me3). CFP1 defines SET1 complex occupancy on chromatin, and its multivalent interactions are required for the SET1 complex to place H3K4me3. In the absence of CFP1, gene expression is perturbed, suggesting that normal targeting and function of the SET1 complex are central to creating an appropriately functioning vertebrate promoter-associated epigenome.

Indexed as

AnimalsChromatinChromatin ImmunoprecipitationCpG IslandsDNA MethylationFluorescence Recovery After PhotobleachingHistonesHumansMethylationPromoter Regions, GeneticSpectrometry, FluorescenceChromatinHistoneschromatinCpG islandDNA methylationepigeneticsH3K4me3histonehistone methylationmultivalentSET1transcription

Identifiers

PMID28877467
PMCPMC5603731
OpenAlexW2751712711

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.