Evidence map›Paper›PMID 28877269›Full record

ArticlePloS one2017

Pf16 and phiPMW: Expanding the realm of Pseudomonas putida bacteriophages.

Damian J Magill, Victor N Krylov, Olga V Shaburova, John W McGrath, Christopher C R Allen, John P Quinn, Leonid A Kulakov

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.9field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 10 citations in OpenAlex.

  1. Article
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  4. Viruses · 2018
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Damian J MagillQueen's University Belfast, School of Biological Sciences, Medical Biology Centre, Belfast, Northern Ireland.ORCID http://orcid.org/0000-0002-2162-2074
Victor N KrylovDepartment of Microbiology, Laboratory for Genetics of Bacteriophages, I.I. Mechnikov Research Institute for Vaccines and Sera, Moscow, Russia.
Olga V ShaburovaDepartment of Microbiology, Laboratory for Genetics of Bacteriophages, I.I. Mechnikov Research Institute for Vaccines and Sera, Moscow, Russia.
John W McGrathQueen's University Belfast, School of Biological Sciences, Medical Biology Centre, Belfast, Northern Ireland.
Christopher C R AllenQueen's University Belfast, School of Biological Sciences, Medical Biology Centre, Belfast, Northern Ireland.
John P QuinnQueen's University Belfast, School of Biological Sciences, Medical Biology Centre, Belfast, Northern Ireland.
Leonid A KulakovQueen's University Belfast, School of Biological Sciences, Medical Biology Centre, Belfast, Northern Ireland.
Queen's University Belfast · GBResearch Institute of Vaccines and Sera. Mechnikov of the Russian Academy of Medical Sciences · RU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We present the analysis of two novel Pseudomonas putida phages, pf16 and phiPMW. Pf16 represents a peripherally related T4-like phage, and is the first of its kind infecting a Pseudomonad, with evidence suggesting cyanophage origins. Extensive divergence has resulted in pf16 occupying a newly defined clade designated as the pf16-related phages, lying at the interface of the Schizo T-Evens and Exo T-Evens. Recombination with an ancestor of the P. putida phage AF is likely responsible for the tropism of this phage. phiPMW represents a completely novel Pseudomonas phage with a genome containing substantial genetic novelty through its many hypothetical proteins. Evidence suggests that this phage has been extensively shaped through gene transfer events and vertical evolution. Phylogenetics shows that this phage has an evolutionary history involving FelixO1-related viruses but is in itself highly distinct from this group.

Indexed as

PhylogenyBiofilmsCapsid ProteinsCluster AnalysisComputational BiologyGene LibraryGene Transfer TechniquesGenome, BacterialGenome, ViralMutationPromoter Regions, GeneticPseudomonas PhagesPseudomonas putidaRecombination, GeneticSequence Analysis, DNACapsid Proteins

Identifiers

PMID28877269
PMCPMC5587285
OpenAlexW2753011976

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.