Evidence map›Paper›PMID 28877194›Full record

ArticlePloS one2017

Cluster-based analysis improves predictive validity of spike-triggered receptive field estimates.

James Bigelow, Brian J Malone

Abstract read
In one paragraph

Article in PloS one, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

James BigelowColeman Memorial Laboratory, University of California, San Francisco, California, United States of America.ORCID http://orcid.org/0000-0002-1658-6021
Brian J MaloneColeman Memorial Laboratory, University of California, San Francisco, California, United States of America.

Funding

Nonlinear dynamics of complex sound processing in auditory cortexR01DC011843 · NIDCD · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI MALONE, BRIAN J. · 2012 to 2016
$1.8M
NIDCD NIH HHS R01 DC011843
6 · The paper itself

Abstract

Spectrotemporal receptive field (STRF) characterization is a central goal of auditory physiology. STRFs are often approximated by the spike-triggered average (STA), which reflects the average stimulus preceding a spike. In many cases, the raw STA is subjected to a threshold defined by gain values expected by chance. However, such correction methods have not been universally adopted, and the consequences of specific gain-thresholding approaches have not been investigated systematically. Here, we evaluate two classes of statistical correction techniques, using the resulting STRF estimates to predict responses to a novel validation stimulus. The first, more traditional technique eliminated STRF pixels (time-frequency bins) with gain values expected by chance. This correction method yielded significant increases in prediction accuracy, including when the threshold setting was optimized for each unit. The second technique was a two-step thresholding procedure wherein clusters of contiguous pixels surviving an initial gain threshold were then subjected to a cluster mass threshold based on summed pixel values. This approach significantly improved upon even the best gain-thresholding techniques. Additional analyses suggested that allowing threshold settings to vary independently for excitatory and inhibitory subfields of the STRF resulted in only marginal additional gains, at best. In summary, augmenting reverse correlation techniques with principled statistical correction choices increased prediction accuracy by over 80% for multi-unit STRFs and by over 40% for single-unit STRFs, furthering the interpretational relevance of the recovered spectrotemporal filters for auditory systems analysis.

Indexed as

Acoustic StimulationAction PotentialsAnimalsAuditory CortexAuditory PerceptionAuditory ThresholdCluster AnalysisData Interpretation, StatisticalFemaleMaleReproducibility of ResultsSaimiri

Identifiers

PMID28877194
PMCPMC5587334

What OpenQuestion holds

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.